Wall clock time and date at job start Mon Mar 30 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48494 * 109.46687 * 270.00097 * 3 2 1 5 5 H 1.48499 * 109.46800 * 29.99663 * 3 2 1 6 6 H 1.48500 * 109.47145 * 149.99779 * 3 2 1 7 7 C 1.37878 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00143 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47130 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.78728 * 51.74899 * 10 9 7 12 12 C 1.54939 * 110.72377 * 288.49786 * 10 9 7 13 13 N 1.48536 * 103.22562 * 204.22817 * 12 10 9 14 14 C 1.47902 * 105.81944 * 39.20882 * 13 12 10 15 15 C 1.53998 * 107.05813 * 334.66802 * 14 13 12 16 16 H 1.09000 * 110.30465 * 242.30454 * 15 14 13 17 17 N 1.46901 * 110.30625 * 120.24162 * 15 14 13 18 18 H 0.97003 * 119.99727 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.47704 * 60.00067 * 9 7 2 20 20 H 1.09004 * 109.47103 * 299.99941 * 9 7 2 21 21 H 1.08997 * 110.66141 * 85.79289 * 12 10 9 22 22 H 1.09002 * 110.66677 * 322.66366 * 12 10 9 23 23 H 1.00901 * 110.99901 * 278.69598 * 13 12 10 24 24 H 1.09002 * 109.91883 * 94.02075 * 14 13 12 25 25 H 1.09001 * 109.91708 * 215.31703 * 14 13 12 26 26 H 1.00898 * 110.99623 * 61.45211 * 17 15 14 27 27 H 1.00899 * 110.99910 * 185.40154 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 1 3.5558 -3.2116 -0.7996 12 6 3.7701 -3.3072 1.3750 13 7 4.7962 -4.3801 1.4224 14 6 6.0167 -3.7974 0.8235 15 6 5.5618 -2.6723 -0.1245 16 1 5.8528 -2.9009 -1.1498 17 7 6.1394 -1.3882 0.2942 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6802 0.8910 20 1 3.8752 -0.6805 -0.8889 21 1 2.7672 -3.7318 1.4181 22 1 3.9220 -2.5935 2.1848 23 1 4.4934 -5.1931 0.9072 24 1 6.6553 -3.3880 1.6062 25 1 6.5556 -4.5607 0.2622 26 1 7.1474 -1.4165 0.2590 27 1 5.7792 -0.6300 -0.2656 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260938419.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:59 Heat of formation + Delta-G solvation = -2.861441 kcal Electronic energy + Delta-G solvation = -10109.956234 eV Core-core repulsion = 8288.132084 eV Total energy + Delta-G solvation = -1821.824150 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.56695 -33.22959 -32.64976 -30.67371 -26.69243 -26.26489 -22.31820 -20.92843 -18.56251 -17.08273 -16.07012 -15.02852 -14.66351 -13.99113 -13.83079 -13.26700 -12.49669 -11.86634 -11.65995 -11.46963 -11.13603 -10.85528 -10.37683 -10.17458 -9.79714 -9.52430 -9.08740 -8.55402 -8.28637 -8.10792 -6.01878 -3.99274 3.31951 3.40474 3.46010 4.47889 4.72262 4.88233 5.16100 5.32395 5.49814 5.61021 5.76259 6.05678 6.23002 6.29277 6.54455 6.73102 6.85725 7.16980 7.19710 7.42728 7.62453 7.76997 7.78162 7.88406 8.56292 9.02848 9.61064 11.11610 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.064469 B = 0.014993 C = 0.012828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.214594 B = 1867.093935 C = 2182.121851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.518 4.518 8 H 0.070 0.930 9 C 0.004 3.996 10 C -0.100 4.100 11 H 0.064 0.936 12 C 0.064 3.936 13 N -0.680 5.680 14 C 0.050 3.950 15 C 0.056 3.944 16 H 0.029 0.971 17 N -0.835 5.835 18 H 0.262 0.738 19 H 0.034 0.966 20 H 0.002 0.998 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.328 0.672 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.328 0.672 27 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.965 -4.093 -0.541 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.556 4.556 8 H 0.088 0.912 9 C -0.034 4.034 10 C -0.121 4.121 11 H 0.083 0.917 12 C -0.065 4.065 13 N -0.306 5.306 14 C -0.081 4.081 15 C -0.057 4.057 16 H 0.047 0.953 17 N -0.367 5.367 18 H 0.072 0.928 19 H 0.052 0.948 20 H 0.020 0.980 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.142 0.858 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.647 -4.064 0.892 11.431 hybrid contribution 0.478 1.045 -2.117 2.409 sum 11.125 -3.019 -1.225 11.592 Atomic orbital electron populations 1.69920 1.06328 1.26808 1.51394 1.25029 0.94710 0.99177 0.94640 0.86791 0.80731 0.83632 0.78279 1.20626 1.21504 1.18505 1.21165 0.89583 0.94307 1.50535 0.91221 1.19406 0.96541 0.90933 0.96505 1.22630 0.91079 1.00583 0.97783 0.91716 1.23034 0.93979 0.92431 0.97036 1.62831 1.05252 1.07860 1.54616 1.22790 0.94057 0.94831 0.96384 1.22726 0.97038 0.90385 0.95511 0.95333 1.58807 1.10026 1.04970 1.62847 0.92828 0.94751 0.97965 0.90937 0.89956 0.85784 0.90281 0.92731 0.86045 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.11 13.96 55.43 0.77 -27.33 15 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 15 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 15 7 C -0.52 -14.68 9.37 -34.44 -0.32 -15.00 15 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 15 9 C 0.00 0.10 2.28 -27.88 -0.06 0.03 15 10 C -0.10 -2.00 2.96 -88.76 -0.26 -2.27 15 11 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 12 C 0.06 1.23 6.70 -1.90 -0.01 1.22 15 13 N -0.68 -11.05 7.51 -110.08 -0.83 -11.88 15 14 C 0.05 0.75 7.31 -2.75 -0.02 0.73 15 15 C 0.06 0.93 4.04 -66.35 -0.27 0.66 15 16 H 0.03 0.45 8.14 -51.93 -0.42 0.02 15 17 N -0.83 -13.33 8.33 -3.51 -0.03 -13.36 15 18 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 19 H 0.03 0.84 6.57 -51.93 -0.34 0.50 15 20 H 0.00 0.05 6.87 -51.93 -0.36 -0.31 15 21 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 22 H 0.08 1.73 7.94 -51.93 -0.41 1.32 15 23 H 0.33 4.71 8.92 -39.29 -0.35 4.36 15 24 H 0.08 1.21 7.92 -51.93 -0.41 0.80 15 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.33 4.21 9.06 -39.29 -0.36 3.86 15 27 H 0.35 5.77 7.21 -39.29 -0.28 5.48 15 LS Contribution 219.52 15.07 3.31 3.31 Total: -1.00 -30.50 219.52 -6.28 -36.78 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.79 Total: 8.15 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.05 Total: -12.82 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.08 Total: -52.57 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -30.50 -6.28 -36.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938419.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.922 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds