Wall clock time and date at job start Mon Mar 30 2020 01:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48494 * 109.46687 * 270.00097 * 3 2 1 5 5 H 1.48499 * 109.46800 * 29.99663 * 3 2 1 6 6 H 1.48500 * 109.47145 * 149.99779 * 3 2 1 7 7 C 1.37878 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00143 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47130 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.78728 * 51.74899 * 10 9 7 12 12 C 1.54939 * 110.72377 * 288.49786 * 10 9 7 13 13 N 1.48536 * 103.22562 * 204.22817 * 12 10 9 14 14 C 1.47902 * 105.81944 * 39.20882 * 13 12 10 15 15 C 1.53998 * 107.05813 * 334.66802 * 14 13 12 16 16 H 1.09000 * 110.30465 * 242.30454 * 15 14 13 17 17 N 1.46901 * 110.30625 * 120.24162 * 15 14 13 18 18 H 0.97003 * 119.99727 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.47704 * 60.00067 * 9 7 2 20 20 H 1.09004 * 109.47103 * 299.99941 * 9 7 2 21 21 H 1.08997 * 110.66141 * 85.79289 * 12 10 9 22 22 H 1.09002 * 110.66677 * 322.66366 * 12 10 9 23 23 H 1.00901 * 110.99901 * 278.69598 * 13 12 10 24 24 H 1.09002 * 109.91883 * 94.02075 * 14 13 12 25 25 H 1.09001 * 109.91708 * 215.31703 * 14 13 12 26 26 H 1.00898 * 110.99623 * 61.45211 * 17 15 14 27 27 H 1.00899 * 110.99910 * 185.40154 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 1 3.5558 -3.2116 -0.7996 12 6 3.7701 -3.3072 1.3750 13 7 4.7962 -4.3801 1.4224 14 6 6.0167 -3.7974 0.8235 15 6 5.5618 -2.6723 -0.1245 16 1 5.8528 -2.9009 -1.1498 17 7 6.1394 -1.3882 0.2942 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6802 0.8910 20 1 3.8752 -0.6805 -0.8889 21 1 2.7672 -3.7318 1.4181 22 1 3.9220 -2.5935 2.1848 23 1 4.4934 -5.1931 0.9072 24 1 6.6553 -3.3880 1.6062 25 1 6.5556 -4.5607 0.2622 26 1 7.1474 -1.4165 0.2590 27 1 5.7792 -0.6300 -0.2656 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260938419.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:58 Heat of formation + Delta-G solvation = -28.075494 kcal Electronic energy + Delta-G solvation = -10111.049598 eV Core-core repulsion = 8288.132084 eV Total energy + Delta-G solvation = -1822.917513 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.99213 -35.20179 -34.09921 -32.52056 -28.23627 -27.86346 -24.19249 -22.39664 -20.11789 -19.06328 -17.60327 -16.55524 -16.14045 -15.75496 -15.35820 -14.78429 -14.50331 -13.45931 -13.42369 -13.16398 -12.64160 -12.41513 -12.04960 -11.85414 -11.67178 -11.36364 -11.12356 -10.75529 -9.63167 -9.39336 -8.26972 -6.29874 1.35794 1.39960 1.52598 2.38469 3.08836 3.38727 3.66012 3.80325 4.11640 4.22675 4.48502 4.61298 4.77296 4.97787 5.02806 5.06573 5.24208 5.32174 5.61837 5.67755 5.78943 6.29682 6.33131 6.54357 6.67846 6.80227 7.34387 8.89834 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.064469 B = 0.014993 C = 0.012828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.214594 B = 1867.093935 C = 2182.121851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.525 4.525 8 H 0.030 0.970 9 C 0.015 3.985 10 C -0.105 4.105 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.677 5.677 14 C 0.053 3.947 15 C 0.064 3.936 16 H 0.046 0.954 17 N -0.844 5.844 18 H 0.264 0.736 19 H 0.030 0.970 20 H 0.011 0.989 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.341 0.659 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.348 0.652 27 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 -3.807 -0.811 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.563 4.563 8 H 0.048 0.952 9 C -0.023 4.023 10 C -0.126 4.126 11 H 0.074 0.926 12 C -0.060 4.060 13 N -0.304 5.304 14 C -0.077 4.077 15 C -0.049 4.049 16 H 0.064 0.936 17 N -0.378 5.378 18 H 0.073 0.927 19 H 0.048 0.952 20 H 0.029 0.971 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.156 0.844 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.162 0.838 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.195 -3.808 0.618 13.748 hybrid contribution -0.350 0.861 -2.028 2.231 sum 12.845 -2.947 -1.409 13.254 Atomic orbital electron populations 1.70081 1.08361 1.27991 1.53140 1.26029 0.95586 1.03583 0.94335 0.85647 0.79774 0.78162 0.79016 1.19286 1.21473 1.16534 1.21519 0.92255 0.92838 1.49693 0.95205 1.19248 0.93111 0.93583 0.96366 1.22574 0.94147 0.98052 0.97816 0.92650 1.22791 0.94182 0.92943 0.96072 1.62750 1.04852 1.07346 1.55461 1.22850 0.93343 0.95141 0.96346 1.22630 0.93928 0.91308 0.96984 0.93627 1.58747 1.11683 1.04489 1.62844 0.92693 0.95207 0.97115 0.92603 0.91888 0.84351 0.90216 0.89462 0.83752 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.46 15 2 C 0.00 0.05 5.47 84.65 0.46 0.51 15 3 Si 0.95 44.71 27.47 68.60 1.88 46.60 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 15 6 H -0.24 -10.58 6.54 99.48 0.65 -9.92 15 7 C -0.52 -30.37 9.37 25.60 0.24 -30.13 15 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 15 9 C 0.01 0.70 2.28 29.85 0.07 0.76 15 10 C -0.11 -4.10 2.96 -9.59 -0.03 -4.13 15 11 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 12 C 0.07 2.67 6.70 86.65 0.58 3.25 15 13 N -0.68 -20.62 7.51 -502.18 -3.77 -24.39 15 14 C 0.05 1.41 7.31 86.45 0.63 2.04 15 15 C 0.06 1.93 4.04 45.79 0.18 2.11 15 16 H 0.05 1.24 8.14 -2.39 -0.02 1.22 15 17 N -0.84 -24.29 8.33 -165.03 -1.38 -25.67 15 18 H 0.26 15.73 8.31 -92.71 -0.77 14.96 15 19 H 0.03 1.42 6.57 -2.39 -0.02 1.40 15 20 H 0.01 0.48 6.87 -2.38 -0.02 0.46 15 21 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.06 2.65 7.94 -2.39 -0.02 2.63 15 23 H 0.34 9.03 8.92 -89.69 -0.80 8.23 15 24 H 0.08 2.14 7.92 -2.39 -0.02 2.12 15 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 26 H 0.35 7.64 9.06 -89.70 -0.81 6.82 15 27 H 0.34 10.35 7.21 -89.69 -0.65 9.70 15 Total: -1.00 -65.90 219.52 -1.96 -67.86 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -1.14 Total: 21.65 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 2.14 Total: -25.60 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.85 Total: -110.52 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.60 kcal Total: -65.90 -1.96 -67.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938419.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.787 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds