Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.64814 * 308.15199 * 10 9 7 12 12 C 1.54945 * 110.72561 * 71.49594 * 10 9 7 13 13 N 1.48531 * 103.22446 * 155.77402 * 12 10 9 14 14 C 1.47900 * 105.82422 * 320.79040 * 13 12 10 15 15 C 1.53996 * 107.05206 * 25.33581 * 14 13 12 16 16 H 1.09004 * 110.39045 * 117.73605 * 15 14 13 17 17 O 1.42898 * 110.30661 * 239.85223 * 15 14 13 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09003 * 110.66461 * 274.21014 * 12 10 9 22 22 H 1.09001 * 110.66507 * 37.33958 * 12 10 9 23 23 H 1.00899 * 111.00178 * 81.31130 * 13 12 10 24 24 H 1.08996 * 109.92045 * 265.98159 * 14 13 12 25 25 H 1.08997 * 110.07874 * 144.77902 * 14 13 12 26 26 H 0.96700 * 114.00375 * 295.72361 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9738 -3.5448 -0.8016 12 6 2.9510 -3.7801 1.3748 13 7 3.3669 -5.2052 1.4220 14 6 2.2523 -5.9706 0.8227 15 6 1.5058 -5.0139 -0.1254 16 1 1.5571 -5.3791 -1.1512 17 8 0.1435 -4.8741 0.2827 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 3.8203 -3.1239 1.4183 22 1 2.2568 -3.5549 2.1844 23 1 4.2226 -5.3494 0.9071 24 1 1.5781 -6.3191 1.6051 25 1 2.6410 -6.8207 0.2620 26 1 -0.3703 -5.6913 0.2250 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940259.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = -84.445858 kcal Electronic energy + Delta-G solvation = -10156.954896 eV Core-core repulsion = 8233.874318 eV Total energy + Delta-G solvation = -1923.080578 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.13233 -36.28716 -35.25198 -32.45147 -29.06672 -27.93264 -24.53605 -22.67413 -20.75726 -18.90128 -18.01031 -17.12814 -16.45031 -15.51975 -15.27152 -14.80959 -14.39459 -13.50350 -13.36932 -13.20421 -12.84811 -12.55741 -12.39279 -12.20833 -11.64865 -11.24932 -10.93725 -10.92133 -10.53122 -9.52037 -8.17047 -6.29077 1.39318 1.41428 1.52354 2.41458 3.15077 3.29554 3.51440 3.83634 4.05825 4.17852 4.43996 4.55076 4.73026 4.99079 5.02305 5.12522 5.23585 5.51562 5.68823 5.78986 5.91215 6.25791 6.51752 6.86510 7.08310 7.39922 8.94866 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.072926 B = 0.013036 C = 0.011539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.859596 B = 2147.314386 C = 2425.967448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.062 3.938 10 C -0.116 4.116 11 H 0.076 0.924 12 C 0.068 3.932 13 N -0.674 5.674 14 C 0.021 3.979 15 C 0.072 3.928 16 H 0.070 0.930 17 O -0.576 6.576 18 H 0.262 0.738 19 H -0.012 1.012 20 H -0.022 1.022 21 H 0.075 0.925 22 H 0.053 0.947 23 H 0.346 0.654 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.592 -10.021 -0.304 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.024 3.976 10 C -0.136 4.136 11 H 0.094 0.906 12 C -0.062 4.062 13 N -0.302 5.302 14 C -0.109 4.109 15 C 0.012 3.988 16 H 0.087 0.913 17 O -0.383 6.383 18 H 0.071 0.929 19 H 0.006 0.994 20 H -0.004 1.004 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.163 0.837 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.494 -9.454 0.524 10.947 hybrid contribution -0.229 0.706 -1.126 1.349 sum 5.265 -8.747 -0.602 10.227 Atomic orbital electron populations 1.70147 1.08003 1.27580 1.51843 1.26044 0.95730 1.03529 0.94902 0.85436 0.78707 0.78360 0.78470 1.19747 1.20941 1.18450 1.21750 0.93476 0.92300 1.50183 0.91903 1.18487 0.93126 0.91705 0.94275 1.22776 0.97763 0.94458 0.98598 0.90579 1.22838 0.98861 0.89107 0.95369 1.62701 1.05681 1.06309 1.55527 1.23515 0.94035 0.96564 0.96823 1.23233 0.82467 0.95707 0.97408 0.91256 1.86742 1.22690 1.39093 1.89737 0.92945 0.99402 1.00391 0.90671 0.92866 0.83736 0.90328 0.88183 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 13.29 21.45 0.28 -59.13 15 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 15 3 Si 0.97 45.26 29.54 68.60 2.03 47.29 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 15 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.54 -31.44 8.81 25.60 0.23 -31.21 15 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 15 9 C 0.06 3.44 3.63 29.85 0.11 3.55 15 10 C -0.12 -4.88 2.97 -9.59 -0.03 -4.91 15 11 H 0.08 3.07 8.14 -2.38 -0.02 3.05 15 12 C 0.07 2.60 6.70 86.65 0.58 3.18 15 13 N -0.67 -20.18 7.51 -502.19 -3.77 -23.95 15 14 C 0.02 0.56 7.33 86.45 0.63 1.19 15 15 C 0.07 2.43 4.23 31.47 0.13 2.57 15 16 H 0.07 2.05 8.14 -2.38 -0.02 2.03 15 17 O -0.58 -21.62 11.80 -148.98 -1.76 -23.38 15 18 H 0.26 15.58 8.31 -92.71 -0.77 14.81 15 19 H -0.01 -0.78 7.61 -2.39 -0.02 -0.80 15 20 H -0.02 -1.39 8.14 -2.39 -0.02 -1.40 15 21 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 22 H 0.05 2.34 7.94 -2.39 -0.02 2.32 15 23 H 0.35 8.53 8.92 -89.70 -0.80 7.73 15 24 H 0.08 2.13 7.96 -2.39 -0.02 2.11 15 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.39 9.63 9.12 -74.06 -0.68 8.95 15 Total: -1.00 -71.00 220.89 -1.40 -72.41 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -0.30 Total: 12.22 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 2.12 Total: -25.45 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -3.49 Total: -83.09 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.76 Total: -23.38 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.00 -1.40 -72.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940259.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.037 kcal (2) G-P(sol) polarization free energy of solvation -71.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds