Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.28779 * 52.87097 * 10 9 7 12 12 C 1.54379 * 110.32209 * 290.63971 * 10 9 7 13 13 N 1.48559 * 104.59281 * 217.25159 * 12 10 9 14 14 C 1.48556 * 104.22507 * 39.47955 * 13 12 10 15 15 C 1.54257 * 110.32597 * 174.99987 * 10 9 7 16 16 H 1.09000 * 110.32641 * 359.97438 * 15 10 9 17 17 O 1.42903 * 110.32142 * 237.79028 * 15 10 9 18 18 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 20 20 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 21 21 H 1.09001 * 110.40910 * 336.02814 * 12 10 9 22 22 H 1.08999 * 110.41582 * 98.46752 * 12 10 9 23 23 H 1.00899 * 110.99729 * 279.91583 * 13 12 10 24 24 H 1.08999 * 110.41151 * 201.74019 * 14 13 12 25 25 H 1.09001 * 110.51095 * 79.35042 * 14 13 12 26 26 H 0.96702 * 113.99897 * 180.02562 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9597 -3.5485 0.8146 12 6 2.9813 -3.7381 -1.3553 13 7 3.1315 -5.1925 -1.6186 14 6 1.8454 -5.7806 -1.1637 15 6 1.4978 -5.0058 0.1255 16 1 0.4228 -4.8368 0.1879 17 8 1.9556 -5.7224 1.2740 18 1 -0.4850 0.8401 0.0004 19 1 0.6246 -2.5570 0.8898 20 1 0.6239 -2.5567 -0.8903 21 1 2.3854 -3.2696 -2.1386 22 1 3.9590 -3.2617 -1.2839 23 1 3.9078 -5.5754 -1.1002 24 1 1.9680 -6.8420 -0.9480 25 1 1.0708 -5.6334 -1.9163 26 1 1.5208 -6.5763 1.4039 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940267.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = -87.123445 kcal Electronic energy + Delta-G solvation = -10097.738075 eV Core-core repulsion = 8174.541388 eV Total energy + Delta-G solvation = -1923.196687 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.19676 -36.41838 -35.22815 -32.53627 -29.04157 -27.92891 -24.47077 -22.91291 -20.74907 -18.79916 -17.81498 -17.34193 -16.63283 -15.96694 -15.14066 -14.72758 -14.24410 -13.62484 -13.49207 -13.07575 -12.81982 -12.54274 -12.40976 -12.13457 -11.75659 -11.47754 -11.16175 -10.97369 -10.58493 -9.54604 -8.21475 -6.32295 1.39735 1.42710 1.50531 2.39951 3.11748 3.29624 3.36536 3.82309 4.11990 4.13427 4.38007 4.61525 4.71364 4.89423 4.96440 5.14137 5.19275 5.43359 5.60783 5.68278 5.78803 6.20955 6.43555 6.81507 6.92324 7.36787 8.90352 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073727 B = 0.012153 C = 0.011446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.686982 B = 2303.319824 C = 2445.763409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.043 3.957 10 C -0.107 4.107 11 H 0.056 0.944 12 C 0.063 3.937 13 N -0.666 5.666 14 C 0.019 3.981 15 C 0.070 3.930 16 H 0.053 0.947 17 O -0.577 6.577 18 H 0.264 0.736 19 H -0.017 1.017 20 H -0.002 1.002 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.342 0.658 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 -9.519 -1.206 10.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.208 1.208 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.006 3.994 10 C -0.127 4.127 11 H 0.074 0.926 12 C -0.066 4.066 13 N -0.293 5.293 14 C -0.111 4.111 15 C 0.010 3.990 16 H 0.071 0.929 17 O -0.386 6.386 18 H 0.073 0.927 19 H 0.002 0.998 20 H 0.016 0.984 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.158 0.842 24 H 0.123 0.877 25 H 0.102 0.898 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.026 -8.902 -1.911 9.955 hybrid contribution -0.351 0.688 1.129 1.368 sum 3.675 -8.214 -0.782 9.032 Atomic orbital electron populations 1.70087 1.07798 1.27874 1.51610 1.25973 0.95765 1.03344 0.94704 0.85503 0.78288 0.78109 0.79197 1.20802 1.19420 1.18928 1.21556 0.93425 0.91962 1.50544 0.92183 1.18944 0.93520 0.92405 0.94562 1.22438 0.98145 0.93463 0.98638 0.92594 1.22811 0.99947 0.89409 0.94478 1.63343 1.05147 1.03571 1.57223 1.23694 0.93131 0.99575 0.94692 1.23284 0.97321 0.91952 0.86443 0.92853 1.86527 1.67739 1.37148 1.47159 0.92734 0.99828 0.98355 0.91515 0.90876 0.84200 0.87681 0.89778 0.75805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 15 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 15 3 Si 0.96 44.60 29.54 68.60 2.03 46.62 15 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 15 5 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 15 7 C -0.54 -30.76 8.73 25.60 0.22 -30.54 15 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 15 9 C 0.04 2.31 4.16 29.85 0.12 2.44 15 10 C -0.11 -4.57 2.82 -9.90 -0.03 -4.60 15 11 H 0.06 2.56 7.98 -2.39 -0.02 2.54 15 12 C 0.06 2.41 6.64 86.45 0.57 2.98 15 13 N -0.67 -20.58 7.62 -500.87 -3.82 -24.40 15 14 C 0.02 0.54 7.21 86.45 0.62 1.16 15 15 C 0.07 2.42 4.07 31.49 0.13 2.55 15 16 H 0.05 1.94 7.71 -2.39 -0.02 1.92 15 17 O -0.58 -17.99 13.26 -148.98 -1.98 -19.97 15 18 H 0.26 15.21 8.31 -92.70 -0.77 14.44 15 19 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 15 20 H 0.00 -0.11 7.98 -2.39 -0.02 -0.13 15 21 H 0.07 2.78 7.75 -2.39 -0.02 2.76 15 22 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.34 9.46 8.92 -89.69 -0.80 8.66 15 24 H 0.10 2.21 8.08 -2.39 -0.02 2.19 15 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.39 7.65 9.12 -74.06 -0.68 6.97 15 Total: -1.00 -66.26 222.13 -1.68 -67.94 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -0.30 Total: 12.30 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 2.11 Total: -25.55 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.53 Total: -81.34 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.98 Total: -19.97 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.26 -1.68 -67.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940267.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.186 kcal (2) G-P(sol) polarization free energy of solvation -66.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds