Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.39991 * 59.99574 * 9 7 2 11 11 C 1.53021 * 109.39408 * 179.81279 * 9 7 2 12 12 O 1.43249 * 108.66939 * 169.30085 * 11 9 7 13 13 C 1.42967 * 112.98512 * 291.63684 * 12 11 9 14 14 C 1.50345 * 109.81441 * 49.59374 * 13 12 11 15 15 O 1.21283 * 118.83701 * 164.09953 * 14 13 12 16 16 N 1.33753 * 122.29398 * 344.02745 * 14 13 12 17 17 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.60663 * 289.05058 * 11 9 7 19 19 H 1.08998 * 109.61045 * 49.54614 * 11 9 7 20 20 H 1.09000 * 109.41580 * 169.70240 * 13 12 11 21 21 H 1.09008 * 109.41359 * 289.49196 * 13 12 11 22 22 H 0.96998 * 118.63407 * 181.97585 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6252 -2.5558 -0.8900 11 6 2.2471 -3.6608 -0.0035 12 8 1.5338 -4.8773 0.2484 13 6 1.0161 -4.9556 1.5788 14 6 0.2734 -3.6915 1.9119 15 8 -0.4727 -3.6860 2.8680 16 7 0.4081 -2.5726 1.1915 17 1 -0.4850 -0.8401 -0.0004 18 1 2.7372 -3.7190 -0.9754 19 1 2.9928 -3.5060 0.7762 20 1 0.3373 -5.8051 1.6541 21 1 1.8395 -5.0877 2.2808 22 1 -0.0743 -1.7789 1.4710 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260971390.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = -88.986267 kcal Electronic energy + Delta-G solvation = -10126.256298 eV Core-core repulsion = 8067.145739 eV Total energy + Delta-G solvation = -2059.110559 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.64699 -36.89873 -34.96369 -31.87912 -29.46988 -26.93483 -24.47725 -22.26302 -18.92823 -17.82241 -16.81907 -16.08643 -14.92480 -14.49021 -14.06600 -13.92203 -13.56858 -12.75573 -12.43684 -11.80711 -11.06225 -10.82077 -10.66477 -10.25408 -9.86758 -9.55195 -8.89516 -8.52674 -7.92308 -6.71554 -4.55132 3.25409 3.29865 3.29960 3.49476 3.99667 4.26089 4.45753 4.99378 5.38831 5.53903 5.69549 5.84252 5.88312 6.29680 6.83656 7.18209 7.49315 7.85319 7.99504 8.30036 8.48986 8.98999 9.21450 10.62716 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.068931 B = 0.016074 C = 0.014071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.103031 B = 1741.491135 C = 1989.446366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.030 3.970 3 Si 1.075 2.925 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.616 4.616 8 H 0.065 0.935 9 C 0.209 3.791 10 H 0.040 0.960 11 C 0.058 3.942 12 O -0.387 6.387 13 C 0.053 3.947 14 C 0.472 3.528 15 O -0.587 6.587 16 N -0.694 5.694 17 H 0.272 0.728 18 H 0.103 0.897 19 H 0.054 0.946 20 H 0.117 0.883 21 H 0.078 0.922 22 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 -4.367 -0.450 6.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.902 3.098 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.655 4.655 8 H 0.083 0.917 9 C 0.108 3.892 10 H 0.058 0.942 11 C -0.019 4.019 12 O -0.306 6.306 13 C -0.027 4.027 14 C 0.257 3.743 15 O -0.471 6.471 16 N -0.347 5.347 17 H 0.085 0.915 18 H 0.121 0.879 19 H 0.073 0.927 20 H 0.135 0.865 21 H 0.096 0.904 22 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.060 -3.051 -0.227 5.083 hybrid contribution 0.117 -1.131 0.252 1.165 sum 4.176 -4.182 0.025 5.911 Atomic orbital electron populations 1.70912 1.06932 1.30986 1.44468 1.26092 0.96361 1.03378 0.91850 0.83441 0.74923 0.74607 0.76867 1.20438 1.20943 1.21098 1.22103 0.94936 0.90772 1.57670 0.91702 1.19548 0.89673 0.95440 0.84560 0.94241 1.23067 0.94033 0.82805 1.01965 1.88062 1.72954 1.40451 1.29094 1.22637 0.97999 0.96463 0.85602 1.20969 0.82970 0.86957 0.83380 1.90668 1.40397 1.85594 1.30392 1.46920 1.46960 1.12059 1.28730 0.91535 0.87914 0.92741 0.86475 0.90411 0.75852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 13.02 55.43 0.72 -24.46 14 2 C 0.03 0.79 5.29 -17.82 -0.09 0.70 14 3 Si 1.08 23.19 29.90 -169.99 -5.08 18.10 14 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 14 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 14 7 C -0.62 -15.73 8.73 -34.44 -0.30 -16.03 14 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 14 9 C 0.21 4.95 2.80 -69.29 -0.19 4.75 14 10 H 0.04 1.00 8.01 -51.93 -0.42 0.58 14 11 C 0.06 1.14 6.14 37.17 0.23 1.37 14 12 O -0.39 -7.39 10.86 -35.23 -0.38 -7.77 14 13 C 0.05 0.95 6.98 35.83 0.25 1.20 14 14 C 0.47 10.72 7.84 -11.61 -0.09 10.63 14 15 O -0.59 -14.86 17.84 5.55 0.10 -14.76 14 16 N -0.69 -16.82 4.85 -55.57 -0.27 -17.09 14 17 H 0.27 7.62 5.84 -40.82 -0.24 7.38 14 18 H 0.10 1.81 8.14 -51.93 -0.42 1.39 14 19 H 0.05 1.04 8.06 -51.93 -0.42 0.62 14 20 H 0.12 1.83 8.14 -51.93 -0.42 1.41 14 21 H 0.08 1.24 8.14 -51.92 -0.42 0.82 14 22 H 0.40 10.53 6.52 -40.82 -0.27 10.26 14 LS Contribution 196.16 15.07 2.96 2.96 Total: -1.00 -29.41 196.16 -3.97 -33.38 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -1.81 Total: 7.01 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.20 Total: 2.62 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.45 Total: -41.55 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.28 Total: -22.53 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.08 Total: 18.10 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -29.41 -3.97 -33.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260971390.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.606 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds