Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.39991 * 59.99574 * 9 7 2 11 11 C 1.53021 * 109.39408 * 179.81279 * 9 7 2 12 12 O 1.43249 * 108.66939 * 169.30085 * 11 9 7 13 13 C 1.42967 * 112.98512 * 291.63684 * 12 11 9 14 14 C 1.50345 * 109.81441 * 49.59374 * 13 12 11 15 15 O 1.21283 * 118.83701 * 164.09953 * 14 13 12 16 16 N 1.33753 * 122.29398 * 344.02745 * 14 13 12 17 17 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.60663 * 289.05058 * 11 9 7 19 19 H 1.08998 * 109.61045 * 49.54614 * 11 9 7 20 20 H 1.09000 * 109.41580 * 169.70240 * 13 12 11 21 21 H 1.09008 * 109.41359 * 289.49196 * 13 12 11 22 22 H 0.96998 * 118.63407 * 181.97585 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6252 -2.5558 -0.8900 11 6 2.2471 -3.6608 -0.0035 12 8 1.5338 -4.8773 0.2484 13 6 1.0161 -4.9556 1.5788 14 6 0.2734 -3.6915 1.9119 15 8 -0.4727 -3.6860 2.8680 16 7 0.4081 -2.5726 1.1915 17 1 -0.4850 -0.8401 -0.0004 18 1 2.7372 -3.7190 -0.9754 19 1 2.9928 -3.5060 0.7762 20 1 0.3373 -5.8051 1.6541 21 1 1.8395 -5.0877 2.2808 22 1 -0.0743 -1.7789 1.4710 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260971390.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = -111.547767 kcal Electronic energy + Delta-G solvation = -10127.234638 eV Core-core repulsion = 8067.145739 eV Total energy + Delta-G solvation = -2060.088899 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.38379 -38.63219 -36.78966 -33.82247 -31.19911 -28.57991 -26.30859 -24.10052 -20.61476 -19.75801 -18.52125 -17.79446 -16.68489 -16.18017 -15.77616 -15.66579 -15.29020 -14.48438 -14.28444 -13.62220 -12.72511 -12.46800 -12.33434 -11.95095 -11.55362 -11.39026 -10.81517 -10.31849 -9.85113 -8.77503 -6.62177 1.49348 1.56442 1.60541 1.81250 2.27622 2.49868 2.87009 3.12570 3.62782 4.12171 4.15040 4.25821 4.40020 4.78818 5.00568 5.41287 5.62222 5.96623 6.04716 6.29740 6.59667 7.11937 7.23858 8.56829 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.068931 B = 0.016074 C = 0.014071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.103031 B = 1741.491135 C = 1989.446366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.019 4.019 3 Si 1.121 2.879 4 H -0.289 1.289 5 H -0.262 1.262 6 H -0.272 1.272 7 C -0.623 4.623 8 H 0.075 0.925 9 C 0.202 3.798 10 H 0.015 0.985 11 C 0.067 3.933 12 O -0.384 6.384 13 C 0.059 3.941 14 C 0.464 3.536 15 O -0.618 6.618 16 N -0.704 5.704 17 H 0.260 0.740 18 H 0.125 0.875 19 H 0.065 0.935 20 H 0.147 0.853 21 H 0.110 0.890 22 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -5.073 -0.479 7.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.219 4.219 3 Si 0.942 3.058 4 H -0.215 1.215 5 H -0.187 1.187 6 H -0.197 1.197 7 C -0.661 4.661 8 H 0.093 0.907 9 C 0.101 3.899 10 H 0.033 0.967 11 C -0.010 4.010 12 O -0.303 6.303 13 C -0.020 4.020 14 C 0.252 3.748 15 O -0.504 6.504 16 N -0.354 5.354 17 H 0.072 0.928 18 H 0.143 0.857 19 H 0.084 0.916 20 H 0.165 0.835 21 H 0.128 0.872 22 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.702 -3.801 -0.273 6.859 hybrid contribution -0.421 -0.954 0.273 1.078 sum 5.281 -4.755 0.001 7.107 Atomic orbital electron populations 1.71016 1.08098 1.30363 1.47024 1.27448 0.96346 1.07013 0.91113 0.82862 0.74044 0.70705 0.78194 1.21510 1.18663 1.19687 1.22463 0.95584 0.91582 1.56466 0.90728 1.19611 0.89956 0.96876 0.83463 0.96703 1.23008 0.92886 0.81381 1.03703 1.88080 1.72814 1.39632 1.29768 1.22831 0.99021 0.94369 0.85773 1.21890 0.82622 0.87837 0.82465 1.90646 1.41836 1.86186 1.31707 1.47006 1.47103 1.12223 1.29105 0.92825 0.85711 0.91635 0.83531 0.87196 0.77693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.01 13.02 21.45 0.28 -52.73 14 2 C -0.02 -0.98 5.29 84.65 0.45 -0.53 14 3 Si 1.12 45.93 29.90 68.60 2.05 47.98 14 4 H -0.29 -12.24 7.11 99.48 0.71 -11.54 14 5 H -0.26 -9.75 7.11 99.48 0.71 -9.05 14 6 H -0.27 -10.46 7.11 99.48 0.71 -9.75 14 7 C -0.62 -31.25 8.73 25.60 0.22 -31.03 14 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 14 9 C 0.20 9.47 2.80 44.33 0.12 9.59 14 10 H 0.02 0.77 8.01 -2.39 -0.02 0.76 14 11 C 0.07 2.45 6.14 71.99 0.44 2.89 14 12 O -0.38 -13.46 10.86 -148.98 -1.62 -15.07 14 13 C 0.06 1.94 6.98 71.12 0.50 2.44 14 14 C 0.46 20.59 7.84 87.70 0.69 21.28 14 15 O -0.62 -31.02 17.84 -3.04 -0.05 -31.07 14 16 N -0.70 -34.18 4.85 -448.67 -2.17 -36.36 14 17 H 0.26 15.06 5.84 -92.71 -0.54 14.52 14 18 H 0.13 4.01 8.14 -2.39 -0.02 4.00 14 19 H 0.07 2.28 8.06 -2.39 -0.02 2.26 14 20 H 0.15 4.01 8.14 -2.39 -0.02 3.99 14 21 H 0.11 3.01 8.14 -2.38 -0.02 2.99 14 22 H 0.39 20.76 6.52 -92.71 -0.60 20.15 14 Total: -1.00 -62.53 196.16 1.76 -60.77 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.86 Total: 21.84 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 2.42 Total: 4.64 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -1.90 Total: -89.09 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.67 Total: -46.14 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.05 Total: 47.98 kcal Total: -62.53 1.76 -60.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260971390.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.774 kcal (2) G-P(sol) polarization free energy of solvation -62.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds