Wall clock time and date at job start Mon Mar 30 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99763 * 2 1 4 4 H 1.48503 * 109.46766 * 269.99572 * 3 2 1 5 5 H 1.48500 * 109.47232 * 29.99520 * 3 2 1 6 6 H 1.48501 * 109.47194 * 149.99997 * 3 2 1 7 7 C 1.37881 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99393 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99926 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.36815 * 299.10424 * 9 7 2 11 11 C 1.54375 * 110.41011 * 176.62562 * 9 7 2 12 12 C 1.54261 * 105.06314 * 217.36878 * 11 9 7 13 13 H 1.08998 * 110.32297 * 118.89437 * 12 11 9 14 14 C 1.52993 * 110.32666 * 241.10645 * 12 11 9 15 15 N 1.46900 * 109.47443 * 182.08661 * 14 12 11 16 16 C 1.54387 * 105.05566 * 0.02562 * 12 11 9 17 17 N 1.48557 * 104.59604 * 23.85224 * 16 12 11 18 18 H 0.96998 * 120.00268 * 0.02562 * 1 2 3 19 19 H 1.09000 * 110.32215 * 98.47140 * 11 9 7 20 20 H 1.08998 * 110.32379 * 336.26907 * 11 9 7 21 21 H 1.09005 * 109.47019 * 302.09218 * 14 12 11 22 22 H 1.09006 * 109.47390 * 62.08811 * 14 12 11 23 23 H 1.00903 * 110.99522 * 56.04828 * 15 14 12 24 24 H 1.00894 * 111.00058 * 179.97438 * 15 14 12 25 25 H 1.09001 * 110.40977 * 142.63130 * 16 12 11 26 26 H 1.09000 * 110.40800 * 264.95304 * 16 12 11 27 27 H 1.00894 * 111.00333 * 200.95635 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6306 -2.5790 0.8931 11 6 2.2327 -3.6876 -0.0840 12 6 1.5302 -4.7246 -0.9844 13 1 2.1259 -4.9164 -1.8768 14 6 1.2930 -6.0243 -0.2129 15 7 0.6693 -7.0143 -1.1012 16 6 0.1834 -4.0751 -1.3687 17 7 0.4169 -2.6152 -1.2235 18 1 -0.4850 0.8400 -0.0004 19 1 2.4086 -4.1046 0.9076 20 1 3.1732 -3.3704 -0.5344 21 1 2.2457 -6.4106 0.1497 22 1 0.6342 -5.8295 0.6334 23 1 1.2308 -7.1643 -1.9260 24 1 0.5027 -7.8824 -0.6147 25 1 -0.0755 -4.3181 -2.3992 26 1 -0.6046 -4.4051 -0.6917 27 1 -0.4547 -2.1186 -1.1154 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972994.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:01 Heat of formation + Delta-G solvation = -31.921738 kcal Electronic energy + Delta-G solvation = -10014.281567 eV Core-core repulsion = 8191.197268 eV Total energy + Delta-G solvation = -1823.084299 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.46183 -35.64013 -34.10626 -30.79078 -30.03559 -26.27607 -24.61979 -21.80215 -20.66750 -18.58543 -17.14833 -16.51623 -16.19790 -15.64009 -15.42305 -14.57044 -13.94445 -13.62040 -13.24209 -12.88343 -12.71210 -12.40571 -12.27543 -11.89342 -11.55642 -11.20717 -11.04771 -10.59735 -9.53827 -8.91500 -8.13392 -6.22469 1.42768 1.44773 1.54168 2.45345 3.15697 3.63800 3.86244 4.01296 4.28577 4.40447 4.59047 4.67594 4.71750 4.85956 5.06731 5.13291 5.20771 5.42664 5.54523 5.78654 6.20568 6.26316 6.52216 6.69101 6.91981 6.96860 7.47437 8.98068 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.108206 B = 0.011747 C = 0.011082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 258.704384 B = 2383.109168 C = 2526.013437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.192 3.808 10 H -0.031 1.031 11 C -0.107 4.107 12 C -0.081 4.081 13 H 0.074 0.926 14 C 0.080 3.920 15 N -0.854 5.854 16 C 0.050 3.950 17 N -0.670 5.670 18 H 0.262 0.738 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.347 0.653 24 H 0.350 0.650 25 H 0.067 0.933 26 H 0.018 0.982 27 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -9.685 -0.817 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.084 3.916 10 H -0.013 1.013 11 C -0.146 4.146 12 C -0.101 4.101 13 H 0.092 0.908 14 C -0.051 4.051 15 N -0.385 5.385 16 C -0.080 4.080 17 N -0.299 5.299 18 H 0.071 0.929 19 H 0.080 0.920 20 H 0.074 0.926 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.160 0.840 24 H 0.164 0.836 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.555 -8.983 -1.365 9.438 hybrid contribution 0.293 0.330 0.951 1.048 sum 2.848 -8.652 -0.415 9.118 Atomic orbital electron populations 1.69937 1.07350 1.27462 1.51378 1.25798 0.95739 1.02611 0.93960 0.85507 0.78676 0.78983 0.78069 1.20386 1.20864 1.19114 1.21456 0.92843 0.91657 1.50613 0.92617 1.19932 0.90894 0.93703 0.87040 1.01337 1.22318 0.98589 0.95049 0.98594 1.21829 0.95879 0.94099 0.98252 0.90766 1.21731 0.97152 0.91376 0.94857 1.58601 1.54566 1.14516 1.10823 1.22794 0.95888 0.89765 0.99527 1.63989 1.20261 1.06270 1.39406 0.92920 0.92019 0.92558 0.94116 0.92397 0.83963 0.83595 0.91471 0.96378 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 12.08 21.45 0.26 -54.35 15 2 C 0.02 1.05 5.41 84.66 0.46 1.51 15 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 15 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 7 C -0.53 -30.31 8.75 25.60 0.22 -30.09 15 8 H 0.06 3.13 7.58 -2.91 -0.02 3.11 15 9 C 0.19 10.18 3.02 44.31 0.13 10.32 15 10 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 15 11 C -0.11 -4.52 6.18 31.49 0.19 -4.32 15 12 C -0.08 -2.90 3.25 -9.90 -0.03 -2.94 15 13 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 14 C 0.08 2.26 5.89 86.30 0.51 2.77 15 15 N -0.85 -19.94 9.42 -186.72 -1.76 -21.70 15 16 C 0.05 2.06 6.82 86.45 0.59 2.65 15 17 N -0.67 -34.27 7.07 -482.73 -3.42 -37.69 15 18 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 19 H 0.06 2.37 7.71 -2.39 -0.02 2.35 15 20 H 0.06 2.41 7.71 -2.39 -0.02 2.39 15 21 H 0.04 1.01 8.14 -2.38 -0.02 0.99 15 22 H 0.06 1.78 8.05 -2.38 -0.02 1.76 15 23 H 0.35 7.07 8.99 -89.69 -0.81 6.27 15 24 H 0.35 6.40 9.08 -89.70 -0.81 5.58 15 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 26 H 0.02 0.75 7.80 -2.39 -0.02 0.73 15 27 H 0.33 17.94 7.79 -89.70 -0.70 17.24 15 Total: -1.00 -62.84 224.35 -1.96 -64.79 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -1.14 Total: 22.15 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 2.08 Total: -20.10 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.92 Total: -113.73 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -62.84 -1.96 -64.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972994.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.870 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds