Wall clock time and date at job start Mon Mar 30 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99670 * 2 1 4 4 H 1.48498 * 109.47008 * 264.79224 * 3 2 1 5 5 H 1.48499 * 109.47240 * 24.79514 * 3 2 1 6 6 H 1.48503 * 109.46823 * 144.79703 * 3 2 1 7 7 C 1.37874 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00519 * 4.84185 * 7 2 1 9 9 C 1.50706 * 119.99641 * 184.84620 * 7 2 1 10 10 H 1.08998 * 110.33087 * 337.15143 * 9 7 2 11 11 C 1.54911 * 110.37083 * 214.89812 * 9 7 2 12 12 C 1.55143 * 101.65028 * 204.10158 * 11 9 7 13 13 H 1.08997 * 110.70376 * 277.26929 * 12 11 9 14 14 C 1.52992 * 110.70711 * 154.03761 * 12 11 9 15 15 N 1.46900 * 109.47133 * 175.00057 * 14 12 11 16 16 C 1.54317 * 103.02057 * 35.64866 * 12 11 9 17 17 N 1.47442 * 107.23569 * 337.71975 * 16 12 11 18 18 H 0.96998 * 120.00245 * 0.02562 * 1 2 3 19 19 H 1.09004 * 110.98663 * 322.18661 * 11 9 7 20 20 H 1.09000 * 110.99253 * 85.96838 * 11 9 7 21 21 H 1.09001 * 109.46846 * 294.99655 * 14 12 11 22 22 H 1.08999 * 109.47669 * 54.99405 * 14 12 11 23 23 H 1.00896 * 111.00561 * 56.04743 * 15 14 12 24 24 H 1.00904 * 110.99998 * 179.97438 * 15 14 12 25 25 H 1.09002 * 109.88592 * 97.12233 * 16 12 11 26 26 H 1.08998 * 109.89193 * 218.31014 * 16 12 11 27 27 H 1.00904 * 111.00349 * 236.74018 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6067 1.9829 -1.3943 5 1 1.3959 2.6819 0.5871 6 1 3.4874 1.4744 0.8071 7 6 2.0046 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0799 9 6 3.5076 -1.1964 0.1097 10 1 3.9128 -0.2390 -0.2178 11 6 4.1080 -2.3518 -0.7295 12 6 5.4687 -2.5800 -0.0201 13 1 6.2135 -1.8686 -0.3769 14 6 5.9506 -4.0177 -0.2238 15 7 7.2922 -4.1711 0.3546 16 6 5.1346 -2.3215 1.4642 17 7 3.9213 -1.4846 1.4995 18 1 -0.4850 0.8400 -0.0004 19 1 3.4828 -3.2427 -0.6708 20 1 4.2536 -2.0469 -1.7659 21 1 5.2621 -4.7047 0.2683 22 1 5.9868 -4.2412 -1.2900 23 1 7.2985 -3.9074 1.3285 24 1 7.6328 -5.1131 0.2332 25 1 4.9475 -3.2675 1.9723 26 1 5.9608 -1.7973 1.9444 27 1 4.0854 -0.6312 2.0123 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260972999.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:02 Heat of formation + Delta-G solvation = -6.794653 kcal Electronic energy + Delta-G solvation = -10000.302100 eV Core-core repulsion = 8178.307393 eV Total energy + Delta-G solvation = -1821.994707 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.08123 -34.28273 -32.31104 -29.40215 -28.74329 -24.37340 -23.47685 -19.63585 -19.42326 -16.84456 -15.96381 -15.77199 -14.67561 -14.07409 -13.20478 -13.06947 -12.70854 -12.34478 -11.85626 -11.48660 -10.93963 -10.83812 -10.49479 -10.25733 -9.75457 -9.48784 -9.41948 -8.63117 -8.55850 -7.24920 -6.06182 -4.04768 3.27296 3.34530 3.36076 4.41120 4.68613 4.95394 5.24894 5.32379 5.54991 5.76100 5.88532 5.94313 6.16701 6.22484 6.31737 6.59424 6.66253 6.77113 7.09731 7.23108 7.48238 7.69355 8.11826 8.35739 8.65769 9.02251 9.57515 11.07256 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.083809 B = 0.012823 C = 0.012292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.011050 B = 2183.111311 C = 2277.310241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.485 4.485 8 H 0.075 0.925 9 C 0.172 3.828 10 H 0.013 0.987 11 C -0.107 4.107 12 C -0.117 4.117 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.854 5.854 16 C 0.050 3.950 17 N -0.678 5.678 18 H 0.263 0.737 19 H 0.068 0.932 20 H 0.059 0.941 21 H 0.029 0.971 22 H 0.068 0.932 23 H 0.339 0.661 24 H 0.335 0.665 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 -4.097 0.591 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.524 4.524 8 H 0.093 0.907 9 C 0.065 3.935 10 H 0.031 0.969 11 C -0.146 4.146 12 C -0.137 4.137 13 H 0.091 0.909 14 C -0.057 4.057 15 N -0.382 5.382 16 C -0.080 4.080 17 N -0.308 5.308 18 H 0.073 0.927 19 H 0.087 0.913 20 H 0.078 0.922 21 H 0.047 0.953 22 H 0.087 0.913 23 H 0.151 0.849 24 H 0.146 0.854 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.755 -3.963 0.150 11.463 hybrid contribution 0.630 0.877 0.452 1.170 sum 11.385 -3.086 0.602 11.811 Atomic orbital electron populations 1.69917 1.06251 1.26903 1.50497 1.25125 0.94747 0.98982 0.94342 0.86783 0.79776 0.83862 0.78412 1.20343 1.21493 1.19815 1.20905 0.88638 0.94439 1.48428 0.90738 1.20460 0.96465 0.92428 0.84102 0.96897 1.22689 0.93239 1.00515 0.98199 1.22508 0.98127 0.95840 0.97207 0.90915 1.21786 0.88228 0.96335 0.99392 1.58801 1.26160 1.30554 1.22725 1.22597 0.92139 0.98449 0.94848 1.62588 1.29118 1.20992 1.18099 0.92668 0.91307 0.92195 0.95258 0.91329 0.84911 0.85353 0.92628 0.94924 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.85 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 15 3 Si 0.88 21.76 27.02 -169.99 -4.59 17.17 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.27 -6.43 6.78 56.52 0.38 -6.05 15 7 C -0.49 -13.87 9.26 -34.44 -0.32 -14.19 15 8 H 0.07 2.33 8.05 -52.49 -0.42 1.91 15 9 C 0.17 4.13 2.94 -67.33 -0.20 3.93 15 10 H 0.01 0.32 5.25 -51.93 -0.27 0.05 15 11 C -0.11 -2.20 5.93 -24.59 -0.15 -2.34 15 12 C -0.12 -2.02 3.16 -88.80 -0.28 -2.30 15 13 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 14 C 0.07 1.06 6.18 -3.83 -0.02 1.03 15 15 N -0.85 -10.53 9.62 -10.37 -0.10 -10.63 15 16 C 0.05 0.90 6.57 -2.84 -0.02 0.88 15 17 N -0.68 -15.10 7.03 -105.05 -0.74 -15.84 15 18 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 19 H 0.07 1.45 7.95 -51.93 -0.41 1.04 15 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.03 0.43 7.93 -51.93 -0.41 0.02 15 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.34 3.95 8.42 -39.29 -0.33 3.62 15 24 H 0.34 3.35 9.08 -39.29 -0.36 3.00 15 25 H 0.06 0.97 7.68 -51.93 -0.40 0.57 15 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 27 H 0.32 6.86 8.91 -39.29 -0.35 6.51 15 LS Contribution 222.29 15.07 3.35 3.35 Total: -1.00 -30.50 222.29 -6.19 -36.69 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.80 Total: 7.16 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.08 Total: -11.05 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.06 Total: -53.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -30.50 -6.19 -36.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972999.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.894 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds