Wall clock time and date at job start Mon Mar 30 2020 01:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48497 * 109.47042 * 269.99790 * 3 2 1 5 5 H 1.48502 * 109.46993 * 29.99337 * 3 2 1 6 6 H 1.48492 * 109.47102 * 149.99438 * 3 2 1 7 7 C 1.37881 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00264 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.90822 * 59.64928 * 9 7 2 11 11 C 1.54298 * 109.78311 * 181.00545 * 9 7 2 12 12 C 1.54602 * 104.99222 * 120.74517 * 11 9 7 13 13 H 1.08992 * 110.72725 * 263.31062 * 12 11 9 14 14 C 1.53000 * 110.72106 * 140.20101 * 12 11 9 15 15 N 1.46901 * 109.46769 * 177.45023 * 14 12 11 16 16 C 1.54944 * 103.08094 * 21.75731 * 12 11 9 17 17 N 1.47910 * 109.92210 * 298.55091 * 9 7 2 18 18 H 0.97000 * 119.99363 * 0.02562 * 1 2 3 19 19 H 1.08999 * 110.47491 * 1.83387 * 11 9 7 20 20 H 1.09002 * 110.28549 * 239.56458 * 11 9 7 21 21 H 1.09002 * 109.47398 * 297.45318 * 14 12 11 22 22 H 1.09001 * 109.47194 * 57.45499 * 14 12 11 23 23 H 1.00898 * 110.99877 * 56.04956 * 15 14 12 24 24 H 1.00908 * 110.99847 * 180.02562 * 15 14 12 25 25 H 1.08997 * 110.66820 * 81.10728 * 16 12 11 26 26 H 1.08995 * 110.66322 * 204.07337 * 16 12 11 27 27 H 1.00905 * 110.99159 * 335.83088 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6173 -2.5618 -0.8841 11 6 2.2470 -3.6773 0.0267 12 6 1.9023 -4.4641 1.3121 13 1 2.5590 -4.1716 2.1312 14 6 1.9881 -5.9713 1.0636 15 7 1.7157 -6.6901 2.3155 16 6 0.4409 -4.0386 1.6023 17 7 0.4230 -2.6030 1.2217 18 1 -0.4849 0.8401 -0.0004 19 1 3.2720 -3.3091 0.0720 20 1 2.1093 -4.3082 -0.8515 21 1 1.2523 -6.2583 0.3123 22 1 2.9872 -6.2248 0.7092 23 1 0.8212 -6.4231 2.6985 24 1 1.7669 -7.6885 2.1777 25 1 -0.2551 -4.6085 0.9868 26 1 0.2073 -4.1618 2.6598 27 1 0.7967 -2.0279 1.9618 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:04 Heat of formation + Delta-G solvation = -8.890139 kcal Electronic energy + Delta-G solvation = -10027.796234 eV Core-core repulsion = 8205.710660 eV Total energy + Delta-G solvation = -1822.085574 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.89562 -34.17816 -32.17241 -28.93747 -28.19218 -24.28188 -23.19476 -20.09506 -19.06207 -16.80665 -15.60612 -14.84974 -14.60926 -13.77578 -13.63410 -12.79402 -12.53609 -11.86451 -11.76412 -11.26474 -10.88748 -10.51580 -10.47052 -10.07951 -9.85763 -9.41894 -8.96052 -8.53632 -8.44568 -6.98750 -5.92831 -4.06240 3.32306 3.39499 3.42261 4.45660 4.79225 5.20921 5.43046 5.46248 5.73058 5.90269 6.01105 6.20036 6.39030 6.45614 6.59210 6.82512 6.93493 6.99359 7.32823 7.57560 7.76499 7.90653 8.17353 8.45071 9.04264 9.06463 9.61894 11.11682 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.098336 B = 0.011924 C = 0.011320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.669347 B = 2347.719271 C = 2472.902835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.075 3.925 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.204 3.796 10 H 0.040 0.960 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.853 5.853 16 C 0.040 3.960 17 N -0.647 5.647 18 H 0.258 0.742 19 H 0.057 0.943 20 H 0.043 0.957 21 H 0.024 0.976 22 H 0.063 0.937 23 H 0.340 0.660 24 H 0.333 0.667 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 -8.112 2.293 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.131 4.131 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.097 3.903 10 H 0.058 0.942 11 C -0.176 4.176 12 C -0.145 4.145 13 H 0.090 0.910 14 C -0.057 4.057 15 N -0.382 5.382 16 C -0.090 4.090 17 N -0.274 5.274 18 H 0.068 0.932 19 H 0.076 0.924 20 H 0.062 0.938 21 H 0.042 0.958 22 H 0.081 0.919 23 H 0.152 0.848 24 H 0.144 0.856 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.783 -7.584 2.234 8.105 hybrid contribution 0.620 0.357 -0.224 0.750 sum 2.403 -7.227 2.010 7.877 Atomic orbital electron populations 1.70109 1.05642 1.26067 1.47393 1.25070 0.94765 0.98908 0.94386 0.86719 0.79988 0.83902 0.78073 1.20706 1.21219 1.19978 1.21331 0.92621 0.90615 1.53841 0.92625 1.19851 0.88484 0.91376 0.90626 0.94171 1.23017 1.01527 0.98197 0.94827 1.22821 0.99585 0.92930 0.99210 0.90991 1.21793 0.99760 0.94439 0.89731 1.58763 1.39248 1.10110 1.30038 1.23149 0.93614 0.93858 0.98417 1.63072 1.55077 1.01625 1.07590 0.93184 0.92374 0.93790 0.95793 0.91857 0.84756 0.85565 0.92525 0.92965 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.10 12.85 55.43 0.71 -24.39 15 2 C 0.07 2.09 5.40 -17.82 -0.10 1.99 15 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 15 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.55 -15.12 8.36 -34.44 -0.29 -15.41 15 8 H 0.06 1.53 7.33 -52.49 -0.38 1.14 15 9 C 0.20 5.24 3.25 -67.63 -0.22 5.02 15 10 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 11 C -0.14 -2.89 6.15 -25.21 -0.16 -3.04 15 12 C -0.12 -2.32 3.29 -88.75 -0.29 -2.61 15 13 H 0.07 1.41 8.14 -51.93 -0.42 0.98 15 14 C 0.07 1.13 6.15 -3.82 -0.02 1.11 15 15 N -0.85 -11.34 9.62 -10.37 -0.10 -11.44 15 16 C 0.04 0.79 6.31 -1.90 -0.01 0.78 15 17 N -0.65 -15.78 6.83 -104.17 -0.71 -16.49 15 18 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 19 H 0.06 1.26 7.39 -51.93 -0.38 0.87 15 20 H 0.04 0.87 7.85 -51.93 -0.41 0.46 15 21 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 15 22 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.34 4.31 8.25 -39.29 -0.32 3.99 15 24 H 0.33 3.59 9.08 -39.29 -0.36 3.23 15 25 H 0.06 1.09 7.98 -51.93 -0.41 0.68 15 26 H 0.05 0.93 8.05 -51.93 -0.42 0.51 15 27 H 0.33 8.35 8.39 -39.29 -0.33 8.02 15 LS Contribution 224.18 15.07 3.38 3.38 Total: -1.00 -29.10 224.18 -6.67 -35.77 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.84 Total: 9.07 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -1.09 Total: -12.16 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.10 Total: -52.32 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.10 -6.67 -35.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.880 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds