Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48497 * 109.47042 * 269.99790 * 3 2 1 5 5 H 1.48502 * 109.46993 * 29.99337 * 3 2 1 6 6 H 1.48492 * 109.47102 * 149.99438 * 3 2 1 7 7 C 1.37881 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00264 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.90822 * 59.64928 * 9 7 2 11 11 C 1.54298 * 109.78311 * 181.00545 * 9 7 2 12 12 C 1.54602 * 104.99222 * 120.74517 * 11 9 7 13 13 H 1.08992 * 110.72725 * 263.31062 * 12 11 9 14 14 C 1.53000 * 110.72106 * 140.20101 * 12 11 9 15 15 N 1.46901 * 109.46769 * 177.45023 * 14 12 11 16 16 C 1.54944 * 103.08094 * 21.75731 * 12 11 9 17 17 N 1.47910 * 109.92210 * 298.55091 * 9 7 2 18 18 H 0.97000 * 119.99363 * 0.02562 * 1 2 3 19 19 H 1.08999 * 110.47491 * 1.83387 * 11 9 7 20 20 H 1.09002 * 110.28549 * 239.56458 * 11 9 7 21 21 H 1.09002 * 109.47398 * 297.45318 * 14 12 11 22 22 H 1.09001 * 109.47194 * 57.45499 * 14 12 11 23 23 H 1.00898 * 110.99877 * 56.04956 * 15 14 12 24 24 H 1.00908 * 110.99847 * 180.02562 * 15 14 12 25 25 H 1.08997 * 110.66820 * 81.10728 * 16 12 11 26 26 H 1.08995 * 110.66322 * 204.07337 * 16 12 11 27 27 H 1.00905 * 110.99159 * 335.83088 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6173 -2.5618 -0.8841 11 6 2.2470 -3.6773 0.0267 12 6 1.9023 -4.4641 1.3121 13 1 2.5590 -4.1716 2.1312 14 6 1.9881 -5.9713 1.0636 15 7 1.7157 -6.6901 2.3155 16 6 0.4409 -4.0386 1.6023 17 7 0.4230 -2.6030 1.2217 18 1 -0.4849 0.8401 -0.0004 19 1 3.2720 -3.3091 0.0720 20 1 2.1093 -4.3082 -0.8515 21 1 1.2523 -6.2583 0.3123 22 1 2.9872 -6.2248 0.7092 23 1 0.8212 -6.4231 2.6985 24 1 1.7669 -7.6885 2.1777 25 1 -0.2551 -4.6085 0.9868 26 1 0.2073 -4.1618 2.6598 27 1 0.7967 -2.0279 1.9618 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = -32.093479 kcal Electronic energy + Delta-G solvation = -10028.802406 eV Core-core repulsion = 8205.710660 eV Total energy + Delta-G solvation = -1823.091746 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57590 -35.66385 -34.10779 -30.58989 -30.01053 -26.22703 -24.63957 -21.89706 -20.69827 -18.85371 -16.83344 -16.61045 -16.32998 -15.41466 -15.22522 -14.40716 -14.19281 -13.76279 -13.32506 -13.08044 -12.77413 -12.35367 -12.25023 -11.66757 -11.57921 -11.29030 -10.93589 -10.58135 -9.60093 -8.86253 -8.06479 -6.26810 1.42402 1.43275 1.53485 2.43731 3.16493 3.64074 3.82868 4.04489 4.18400 4.35168 4.58973 4.70420 4.74071 4.86283 5.04118 5.16989 5.20386 5.42227 5.64583 5.81478 6.11769 6.23826 6.48859 6.65137 6.95957 7.09379 7.45404 8.98231 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.098336 B = 0.011924 C = 0.011320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.669347 B = 2347.719271 C = 2472.902835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.562 4.562 8 H 0.053 0.947 9 C 0.200 3.800 10 H 0.000 1.000 11 C -0.130 4.130 12 C -0.111 4.111 13 H 0.064 0.936 14 C 0.083 3.917 15 N -0.854 5.854 16 C 0.045 3.955 17 N -0.667 5.667 18 H 0.259 0.741 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.029 0.971 22 H 0.070 0.930 23 H 0.345 0.655 24 H 0.351 0.649 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -8.869 2.871 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.601 4.601 8 H 0.071 0.929 9 C 0.092 3.908 10 H 0.018 0.982 11 C -0.170 4.170 12 C -0.132 4.132 13 H 0.083 0.917 14 C -0.048 4.048 15 N -0.385 5.385 16 C -0.085 4.085 17 N -0.294 5.294 18 H 0.068 0.932 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.158 0.842 24 H 0.164 0.836 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.532 -8.372 2.814 9.188 hybrid contribution 0.362 0.546 -0.405 0.770 sum 2.894 -7.826 2.408 8.685 Atomic orbital electron populations 1.70239 1.07167 1.26892 1.48410 1.25827 0.95547 1.02351 0.93932 0.85634 0.78740 0.79491 0.78145 1.20246 1.20859 1.19315 1.21653 0.92704 0.91988 1.53732 0.92879 1.19710 0.88772 0.92570 0.89785 0.98246 1.22865 0.99842 0.97211 0.97048 1.22645 0.98246 0.95078 0.97213 0.91743 1.21605 1.00485 0.91993 0.90745 1.58684 1.39672 1.11326 1.28829 1.23189 0.94545 0.91030 0.99785 1.62864 1.55061 1.04461 1.06966 0.93217 0.92942 0.92527 0.95295 0.91111 0.84229 0.83597 0.92081 0.90806 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.95 12.85 21.45 0.28 -52.68 15 2 C 0.03 1.48 5.40 84.65 0.46 1.94 15 3 Si 0.95 43.89 29.54 68.60 2.03 45.91 15 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 7 C -0.56 -31.53 8.36 25.60 0.21 -31.31 15 8 H 0.05 2.93 7.33 -2.91 -0.02 2.91 15 9 C 0.20 10.40 3.25 44.41 0.14 10.54 15 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 15 11 C -0.13 -5.44 6.15 31.58 0.19 -5.24 15 12 C -0.11 -3.93 3.29 -9.58 -0.03 -3.96 15 13 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 14 C 0.08 2.30 6.15 86.30 0.53 2.83 15 15 N -0.85 -19.97 9.62 -186.71 -1.80 -21.77 15 16 C 0.04 1.69 6.31 86.65 0.55 2.23 15 17 N -0.67 -32.71 6.83 -483.49 -3.30 -36.01 15 18 H 0.26 14.62 8.31 -92.71 -0.77 13.85 15 19 H 0.05 2.23 7.39 -2.39 -0.02 2.22 15 20 H 0.06 2.19 7.85 -2.39 -0.02 2.17 15 21 H 0.03 0.79 8.05 -2.39 -0.02 0.77 15 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.34 7.65 8.25 -89.70 -0.74 6.91 15 24 H 0.35 6.35 9.08 -89.69 -0.81 5.54 15 25 H 0.06 2.25 7.98 -2.39 -0.02 2.24 15 26 H 0.07 2.47 8.05 -2.39 -0.02 2.45 15 27 H 0.32 16.44 8.39 -89.69 -0.75 15.69 15 Total: -1.00 -61.79 224.18 -1.87 -63.66 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -1.13 Total: 23.85 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 2.06 Total: -22.97 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.82 Total: -110.46 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.79 -1.87 -63.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.568 kcal (2) G-P(sol) polarization free energy of solvation -61.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds