Wall clock time and date at job start Mon Mar 30 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99968 * 2 1 4 4 H 1.48503 * 109.47163 * 240.00110 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.00106 * 3 2 1 7 7 C 1.38815 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99597 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46691 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 O 1.42890 * 115.55044 * 39.32879 * 12 11 10 14 14 C 1.52997 * 117.49886 * 253.61686 * 12 11 10 15 15 C 1.53002 * 60.00157 * 252.51514 * 14 12 11 16 16 H 0.97000 * 120.00284 * 0.02562 * 1 2 3 17 17 H 0.96999 * 120.00327 * 359.97438 * 9 7 2 18 18 H 1.08993 * 109.47068 * 59.99274 * 10 9 7 19 19 H 1.09000 * 109.46872 * 299.99485 * 10 9 7 20 20 H 1.08993 * 109.47839 * 59.99891 * 11 10 9 21 21 H 1.09000 * 109.47160 * 299.99453 * 11 10 9 22 22 H 0.96698 * 114.00419 * 325.58074 * 13 12 11 23 23 H 1.09008 * 117.49691 * 0.02562 * 14 12 11 24 24 H 1.08990 * 117.49872 * 145.02093 * 14 12 11 25 25 H 1.08999 * 117.49147 * 252.50926 * 15 14 12 26 26 H 1.08995 * 117.51640 * 107.47976 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8288 -6.1447 0.0026 13 8 3.0005 -6.1795 0.8197 14 6 1.8506 -6.9484 -1.2991 15 6 1.0111 -7.4326 -0.1151 16 1 -0.4850 0.8400 -0.0004 17 1 0.3555 -2.3881 0.0005 18 1 2.6841 -3.7141 0.8920 19 1 2.6853 -3.7149 -0.8879 20 1 0.4374 -4.7626 -0.8881 21 1 0.4368 -4.7614 0.8918 22 1 3.4790 -5.3400 0.8573 23 1 1.3203 -6.5329 -2.1560 24 1 2.7590 -7.5037 -1.5325 25 1 1.3673 -8.3065 0.4303 26 1 -0.0717 -7.3358 -0.1926 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260975527.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:05 Heat of formation + Delta-G solvation = -17.798704 kcal Electronic energy + Delta-G solvation = -9736.045377 eV Core-core repulsion = 7815.854837 eV Total energy + Delta-G solvation = -1920.190540 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.59986 -34.73160 -33.88879 -31.65487 -28.58172 -24.06073 -22.42136 -21.67307 -20.09770 -17.44971 -16.35170 -15.24760 -14.49436 -14.31546 -14.04570 -13.21549 -12.94787 -12.49577 -11.54410 -11.51659 -11.10438 -10.98625 -10.96691 -10.71345 -10.28888 -9.95299 -9.68098 -9.04856 -8.88962 -6.96574 -5.78765 -3.08439 3.43562 3.47551 3.48863 3.85628 4.22121 4.53680 4.80560 5.05048 5.28139 5.52660 5.66941 5.71366 5.87477 5.95866 6.03284 6.19310 6.22248 6.29308 6.68661 6.78326 7.66771 7.81568 8.39712 9.50830 10.07287 10.42162 11.44092 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.103567 B = 0.009099 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 270.290359 B = 3076.614164 C = 3212.352595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.149 3.851 11 C -0.116 4.116 12 C 0.069 3.931 13 O -0.538 6.538 14 C -0.202 4.202 15 C -0.168 4.168 16 H 0.256 0.744 17 H 0.384 0.616 18 H 0.019 0.981 19 H 0.022 0.978 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.386 0.614 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -10.618 -0.983 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.021 3.979 11 C -0.154 4.154 12 C 0.027 3.973 13 O -0.346 6.346 14 C -0.239 4.239 15 C -0.205 4.205 16 H 0.066 0.934 17 H 0.218 0.782 18 H 0.037 0.963 19 H 0.040 0.960 20 H 0.095 0.905 21 H 0.092 0.908 22 H 0.237 0.763 23 H 0.116 0.884 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.498 -11.090 -0.895 11.403 hybrid contribution 0.325 1.436 -0.096 1.476 sum 2.823 -9.654 -0.990 10.107 Atomic orbital electron populations 1.69651 1.05177 1.25889 1.57499 1.24760 0.95545 0.97787 1.02791 0.86233 0.78510 0.83331 0.77898 1.21196 1.21633 1.21181 1.19200 0.91059 0.84124 1.43139 0.91133 1.42301 1.05884 0.99835 1.89530 1.20598 0.93737 0.85805 0.97716 1.21762 0.98740 0.91671 1.03214 1.21458 0.88929 0.92839 0.94034 1.86330 1.38893 1.39870 1.69508 1.23609 1.02416 1.04904 0.93009 1.23199 0.98150 0.97473 1.01645 0.93381 0.78194 0.96313 0.96023 0.90505 0.90755 0.76336 0.88373 0.88683 0.88593 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.73 15 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 15 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 15 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 15 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 15 9 N -0.73 -18.82 5.60 -59.91 -0.34 -19.16 15 10 C 0.15 3.00 5.58 -4.04 -0.02 2.98 15 11 C -0.12 -1.95 5.56 -26.73 -0.15 -2.10 15 12 C 0.07 1.05 3.13 -90.62 -0.28 0.76 15 13 O -0.54 -8.47 13.83 -35.23 -0.49 -8.96 15 14 C -0.20 -2.66 10.12 -26.73 -0.27 -2.93 15 15 C -0.17 -2.16 10.20 -26.73 -0.27 -2.44 15 16 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 17 H 0.38 10.36 7.67 -40.82 -0.31 10.05 15 18 H 0.02 0.37 6.69 -51.93 -0.35 0.03 15 19 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 20 H 0.08 1.27 7.94 -51.93 -0.41 0.85 15 21 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 22 H 0.39 5.36 6.65 45.56 0.30 5.66 15 23 H 0.10 1.22 8.08 -51.92 -0.42 0.80 15 24 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.10 1.18 8.14 -51.93 -0.42 0.76 15 26 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 227.32 15.07 3.43 3.43 Total: -1.00 -31.03 227.32 -5.79 -36.82 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -2.85 Total: 9.43 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.24 Total: -11.25 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.39 Total: -46.89 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.49 Total: -8.96 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.03 -5.79 -36.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975527.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.021 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds