Wall clock time and date at job start Mon Mar 30 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99968 * 2 1 4 4 H 1.48503 * 109.47163 * 240.00110 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.00106 * 3 2 1 7 7 C 1.38815 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99597 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46691 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 O 1.42890 * 115.55044 * 39.32879 * 12 11 10 14 14 C 1.52997 * 117.49886 * 253.61686 * 12 11 10 15 15 C 1.53002 * 60.00157 * 252.51514 * 14 12 11 16 16 H 0.97000 * 120.00284 * 0.02562 * 1 2 3 17 17 H 0.96999 * 120.00327 * 359.97438 * 9 7 2 18 18 H 1.08993 * 109.47068 * 59.99274 * 10 9 7 19 19 H 1.09000 * 109.46872 * 299.99485 * 10 9 7 20 20 H 1.08993 * 109.47839 * 59.99891 * 11 10 9 21 21 H 1.09000 * 109.47160 * 299.99453 * 11 10 9 22 22 H 0.96698 * 114.00419 * 325.58074 * 13 12 11 23 23 H 1.09008 * 117.49691 * 0.02562 * 14 12 11 24 24 H 1.08990 * 117.49872 * 145.02093 * 14 12 11 25 25 H 1.08999 * 117.49147 * 252.50926 * 15 14 12 26 26 H 1.08995 * 117.51640 * 107.47976 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8288 -6.1447 0.0026 13 8 3.0005 -6.1795 0.8197 14 6 1.8506 -6.9484 -1.2991 15 6 1.0111 -7.4326 -0.1151 16 1 -0.4850 0.8400 -0.0004 17 1 0.3555 -2.3881 0.0005 18 1 2.6841 -3.7141 0.8920 19 1 2.6853 -3.7149 -0.8879 20 1 0.4374 -4.7626 -0.8881 21 1 0.4368 -4.7614 0.8918 22 1 3.4790 -5.3400 0.8573 23 1 1.3203 -6.5329 -2.1560 24 1 2.7590 -7.5037 -1.5325 25 1 1.3673 -8.3065 0.4303 26 1 -0.0717 -7.3358 -0.1926 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975527.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:05 Heat of formation + Delta-G solvation = -40.700998 kcal Electronic energy + Delta-G solvation = -9737.038495 eV Core-core repulsion = 7815.854837 eV Total energy + Delta-G solvation = -1921.183658 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.79112 -36.61095 -35.03569 -33.60455 -30.34799 -26.00303 -23.65463 -23.14566 -21.35647 -19.35908 -17.79747 -16.81529 -16.16922 -15.62336 -15.50916 -15.05350 -14.67759 -13.80103 -13.10357 -12.90884 -12.69046 -12.62086 -12.45395 -12.17859 -12.15936 -11.88351 -11.17824 -10.95735 -10.16406 -9.05024 -7.97594 -5.27916 1.47751 1.51122 1.57286 2.54562 2.77678 3.11562 3.36313 3.49592 3.97240 3.97538 4.28074 4.42994 4.58711 4.70961 4.74204 4.84975 4.99203 5.19068 5.21892 5.26135 5.46846 6.24228 6.68216 7.30582 8.04289 8.27913 9.25921 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.103567 B = 0.009099 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 270.290359 B = 3076.614164 C = 3212.352595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.078 0.922 9 N -0.747 5.747 10 C 0.148 3.852 11 C -0.102 4.102 12 C 0.046 3.954 13 O -0.548 6.548 14 C -0.193 4.193 15 C -0.156 4.156 16 H 0.253 0.747 17 H 0.374 0.626 18 H 0.027 0.973 19 H 0.025 0.975 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.390 0.610 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -11.242 -1.217 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.096 0.904 9 N -0.389 5.389 10 C 0.021 3.979 11 C -0.140 4.140 12 C 0.004 3.996 13 O -0.357 6.357 14 C -0.231 4.231 15 C -0.193 4.193 16 H 0.061 0.939 17 H 0.206 0.794 18 H 0.045 0.955 19 H 0.043 0.957 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.242 0.758 23 H 0.124 0.876 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.275 -11.750 -1.130 12.250 hybrid contribution 0.121 1.551 -0.024 1.556 sum 3.396 -10.199 -1.154 10.812 Atomic orbital electron populations 1.69811 1.06738 1.26365 1.59164 1.25624 0.96435 1.01310 1.03290 0.85159 0.77189 0.78774 0.78309 1.20203 1.22061 1.20238 1.19648 0.91668 0.85308 1.41879 0.90385 1.42531 1.05682 1.01159 1.89573 1.20748 0.94326 0.84841 0.97937 1.21582 0.97966 0.91488 1.02982 1.21486 0.89357 0.92786 0.95975 1.86318 1.39162 1.40288 1.69937 1.23676 1.02860 1.03869 0.92646 1.23332 0.98873 0.96173 1.00877 0.93851 0.79390 0.95477 0.95687 0.90282 0.91470 0.75842 0.87616 0.87969 0.87814 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.67 13.06 21.65 0.28 -59.39 15 2 C -0.07 -4.28 5.50 84.86 0.47 -3.82 15 3 Si 0.98 45.97 29.55 68.60 2.03 48.00 15 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.25 -14.26 9.99 84.03 0.84 -13.42 15 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 15 9 N -0.75 -38.39 5.60 -343.45 -1.92 -40.31 15 10 C 0.15 5.84 5.58 86.38 0.48 6.32 15 11 C -0.10 -3.33 5.56 30.60 0.17 -3.16 15 12 C 0.05 1.29 3.13 -10.79 -0.03 1.26 15 13 O -0.55 -16.42 13.83 -148.98 -2.06 -18.48 15 14 C -0.19 -4.60 10.12 30.59 0.31 -4.29 15 15 C -0.16 -3.61 10.20 30.60 0.31 -3.30 15 16 H 0.25 15.03 8.31 -92.71 -0.77 14.26 15 17 H 0.37 20.41 7.67 -92.71 -0.71 19.70 15 18 H 0.03 1.04 6.69 -2.39 -0.02 1.03 15 19 H 0.03 0.99 8.14 -2.39 -0.02 0.97 15 20 H 0.08 2.52 7.94 -2.39 -0.02 2.50 15 21 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.39 10.39 6.65 -74.06 -0.49 9.90 15 23 H 0.11 2.36 8.08 -2.38 -0.02 2.34 15 24 H 0.10 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -64.27 227.32 0.84 -63.42 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.03 Total: 27.17 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 2.55 Total: -20.41 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -1.64 Total: -99.70 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -2.06 Total: -18.48 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -64.27 0.84 -63.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975527.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.720 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds