Wall clock time and date at job start Mon Mar 30 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99700 * 2 1 4 4 H 1.48493 * 109.46943 * 265.09159 * 3 2 1 5 5 H 1.48501 * 109.47083 * 25.09260 * 3 2 1 6 6 H 1.48499 * 109.46762 * 145.09290 * 3 2 1 7 7 C 1.37872 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00230 * 3.66777 * 7 2 1 9 9 C 1.50705 * 119.99969 * 183.65727 * 7 2 1 10 10 H 1.09002 * 109.57338 * 335.43179 * 9 7 2 11 11 C 1.54197 * 109.57256 * 215.17311 * 9 7 2 12 12 N 1.40016 * 112.08180 * 161.37178 * 11 9 7 13 13 C 1.47919 * 114.06480 * 61.80746 * 12 11 9 14 14 C 1.50802 * 108.66615 * 279.98174 * 13 12 11 15 15 C 1.53905 * 111.98326 * 92.32920 * 14 13 12 16 16 N 1.44571 * 109.57139 * 95.81212 * 9 7 2 17 17 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 18 18 H 1.08998 * 108.95707 * 40.71071 * 11 9 7 19 19 H 1.08996 * 108.96118 * 282.04590 * 11 9 7 20 20 H 1.00895 * 111.00163 * 295.52087 * 12 11 9 21 21 H 1.09001 * 109.63298 * 39.78598 * 13 12 11 22 22 H 1.08999 * 109.62871 * 160.17809 * 13 12 11 23 23 H 1.09000 * 108.95430 * 213.32736 * 14 13 12 24 24 H 1.09004 * 108.95286 * 331.96871 * 14 13 12 25 25 H 1.08994 * 108.90220 * 197.97571 * 15 14 13 26 26 H 1.09001 * 108.72647 * 79.59493 * 15 14 13 27 27 H 1.00897 * 111.00180 * 87.92069 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6003 1.9866 -1.3949 5 1 1.3985 2.6804 0.5938 6 1 3.4909 1.4724 0.8012 7 6 2.0045 -1.1940 0.0005 8 1 1.4662 -2.1284 -0.0589 9 6 3.5093 -1.1953 0.0838 10 1 3.8966 -0.2486 -0.2928 11 6 4.0723 -2.3564 -0.7603 12 7 5.4263 -2.1755 -1.0676 13 6 6.3117 -2.1225 0.1162 14 6 6.2330 -0.7413 0.7164 15 6 5.1588 -0.6508 1.8148 16 7 3.9181 -1.3762 1.4586 17 1 -0.4850 0.8401 -0.0004 18 1 3.5050 -2.4272 -1.6883 19 1 3.9566 -3.2869 -0.2045 20 1 5.5587 -1.3656 -1.6546 21 1 5.9863 -2.8599 0.8501 22 1 7.3379 -2.3333 -0.1844 23 1 7.2036 -0.4837 1.1402 24 1 5.9911 -0.0267 -0.0704 25 1 4.9172 0.3980 1.9869 26 1 5.5626 -1.0734 2.7349 27 1 3.9936 -2.3560 1.6875 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986725.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:07 Heat of formation + Delta-G solvation = -21.248626 kcal Electronic energy + Delta-G solvation = -10425.498262 eV Core-core repulsion = 8602.876784 eV Total energy + Delta-G solvation = -1822.621478 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.20898 -35.24426 -34.47104 -33.10429 -28.58875 -26.45200 -25.04620 -22.41010 -20.89905 -19.17249 -17.17466 -16.52166 -16.22823 -15.94124 -15.65370 -14.80556 -14.30608 -13.63624 -13.40130 -13.03538 -12.95479 -12.71322 -12.14976 -11.97118 -11.79967 -11.50102 -11.13288 -10.73086 -9.57795 -8.58458 -8.27016 -6.31525 1.30086 1.34719 1.45352 2.36347 3.00613 3.49945 3.80177 3.92452 4.12556 4.31266 4.39106 4.48060 4.68476 4.80094 4.83734 5.04600 5.10383 5.19213 5.32392 5.64327 6.16605 6.29592 6.49910 6.68415 6.86763 6.92313 7.37712 8.89637 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.057346 B = 0.019073 C = 0.017051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.147381 B = 1467.682417 C = 1641.750711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.497 4.497 8 H 0.030 0.970 9 C 0.163 3.837 10 H 0.033 0.967 11 C 0.060 3.940 12 N -0.698 5.698 13 C 0.065 3.935 14 C -0.179 4.179 15 C 0.054 3.946 16 N -0.704 5.704 17 H 0.263 0.737 18 H 0.059 0.941 19 H 0.056 0.944 20 H 0.342 0.658 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.178 -0.393 0.841 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.053 3.947 10 H 0.051 0.949 11 C -0.074 4.074 12 N -0.327 5.327 13 C -0.063 4.063 14 C -0.220 4.220 15 C -0.075 4.075 16 N -0.335 5.335 17 H 0.072 0.928 18 H 0.077 0.923 19 H 0.074 0.926 20 H 0.162 0.838 21 H 0.085 0.915 22 H 0.115 0.885 23 H 0.110 0.890 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.743 -0.457 0.971 13.785 hybrid contribution -0.087 1.125 -0.055 1.129 sum 13.656 0.667 0.916 13.703 Atomic orbital electron populations 1.70074 1.08257 1.27819 1.53026 1.25893 0.95313 1.03002 0.93879 0.85749 0.79432 0.78740 0.78738 1.19468 1.22119 1.17299 1.21198 0.91582 0.92680 1.48212 0.95206 1.20036 0.93491 0.95324 0.85884 0.94860 1.21436 0.88130 0.97832 0.99985 1.58278 1.06829 1.46910 1.20660 1.21818 0.97787 0.95484 0.91205 1.22777 1.00817 0.98746 0.99699 1.22448 0.88468 0.98611 0.97997 1.59884 1.32404 1.15955 1.25293 0.92798 0.92278 0.92599 0.83833 0.91503 0.88534 0.88989 0.93692 0.93962 0.90064 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.66 13.96 21.45 0.30 -60.36 15 2 C 0.02 0.99 5.47 84.65 0.46 1.45 15 3 Si 0.95 45.82 26.97 68.60 1.85 47.67 15 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 15 6 H -0.25 -11.38 5.88 99.48 0.58 -10.79 15 7 C -0.50 -28.53 9.11 25.60 0.23 -28.30 15 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 15 9 C 0.16 7.38 1.77 45.01 0.08 7.46 15 10 H 0.03 1.53 4.14 -2.39 -0.01 1.52 15 11 C 0.06 2.32 5.41 87.95 0.48 2.80 15 12 N -0.70 -21.98 6.46 -528.25 -3.41 -25.39 15 13 C 0.07 1.71 6.26 85.39 0.53 2.25 15 14 C -0.18 -4.86 5.38 30.19 0.16 -4.69 15 15 C 0.05 1.78 6.49 86.38 0.56 2.34 15 16 N -0.70 -28.94 6.10 -493.97 -3.02 -31.96 15 17 H 0.26 15.79 8.31 -92.71 -0.77 15.02 15 18 H 0.06 2.47 7.98 -2.39 -0.02 2.45 15 19 H 0.06 2.16 7.57 -2.39 -0.02 2.15 15 20 H 0.34 10.34 8.22 -89.70 -0.74 9.60 15 21 H 0.07 1.78 7.13 -2.39 -0.02 1.77 15 22 H 0.10 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.09 1.93 8.14 -2.39 -0.02 1.92 15 24 H 0.04 1.35 6.82 -2.38 -0.02 1.33 15 25 H 0.04 1.54 7.17 -2.39 -0.02 1.52 15 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.33 12.63 7.51 -89.70 -0.67 11.96 15 Total: -1.00 -65.30 210.81 -2.13 -67.44 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -0.36 Total: 19.30 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 2.51 Total: -16.70 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.13 Total: -117.71 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.85 Total: 47.67 kcal Total: -65.30 -2.13 -67.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986725.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.187 kcal (2) G-P(sol) polarization free energy of solvation -65.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds