Wall clock time and date at job start Mon Mar 30 2020 02:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.53914 * 2 1 4 4 C 1.53096 * 109.51080 * 120.11067 * 2 1 3 5 5 N 1.47005 * 109.25674 * 63.08575 * 4 2 1 6 6 C 1.47010 * 110.75583 * 58.61728 * 5 4 2 7 7 H 1.09001 * 109.50644 * 61.36293 * 6 5 4 8 8 C 1.50699 * 109.50899 * 181.44646 * 6 5 4 9 9 H 1.08003 * 119.99570 * 120.00474 * 8 6 5 10 10 C 1.37875 * 120.00227 * 299.99775 * 8 6 5 11 11 N 1.31519 * 119.99830 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00150 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47242 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47222 * 120.00274 * 12 10 8 15 15 H 1.48505 * 109.46879 * 240.00635 * 12 10 8 16 16 C 1.53101 * 109.25772 * 301.38586 * 6 5 4 17 17 O 1.43005 * 109.26043 * 56.84635 * 16 6 5 18 18 H 1.08999 * 109.47257 * 299.88478 * 1 2 3 19 19 H 1.09002 * 109.47903 * 59.88950 * 1 2 3 20 20 H 1.09008 * 109.47149 * 179.89084 * 1 2 3 21 21 H 1.09001 * 109.50680 * 183.02122 * 4 2 1 22 22 H 1.09001 * 109.50581 * 303.15021 * 4 2 1 23 23 H 1.00899 * 110.99824 * 182.39502 * 5 4 2 24 24 H 0.96998 * 119.99436 * 179.97438 * 11 10 8 25 25 H 1.09007 * 109.50597 * 176.78233 * 16 6 5 26 26 H 1.08999 * 109.50386 * 296.86609 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7239 1.2483 5 7 1.6110 -2.1289 1.2043 6 6 2.1185 -2.7915 -0.0059 7 1 3.2084 -2.7787 0.0020 8 6 1.6324 -4.2176 -0.0403 9 1 1.0224 -4.5604 -0.8630 10 6 1.9665 -5.0846 0.9783 11 7 2.7090 -4.6670 1.9803 12 14 1.3645 -6.8524 0.9352 13 1 0.5533 -7.0694 -0.2895 14 1 2.5303 -7.7722 0.9256 15 1 0.5318 -7.1211 2.1351 16 6 1.6065 -2.0468 -1.2417 17 8 2.0075 -0.6762 -1.1663 18 1 -0.3634 0.5120 0.8910 19 1 -0.3635 0.5155 -0.8890 20 1 -0.3634 -1.0277 -0.0020 21 1 3.1299 -0.6773 1.2758 22 1 1.6332 -0.2460 2.1390 23 1 1.9013 -2.6222 2.0353 24 1 2.9437 -5.2769 2.6971 25 1 2.0264 -2.5001 -2.1397 26 1 0.5188 -2.1071 -1.2782 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261007775.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:12 Heat of formation + Delta-G solvation = -51.776019 kcal Electronic energy + Delta-G solvation = -10463.812322 eV Core-core repulsion = 8542.148415 eV Total energy + Delta-G solvation = -1921.663907 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.61832 -34.07495 -32.33376 -30.85998 -28.03073 -24.90755 -24.01282 -21.58997 -18.37123 -16.75172 -15.94438 -14.94859 -14.65206 -13.61014 -13.39662 -13.30473 -12.83218 -12.09115 -11.83081 -11.44140 -11.00275 -10.86520 -10.63739 -10.49055 -9.99237 -9.49667 -9.22012 -8.66923 -8.53771 -6.91772 -6.13799 -4.17838 3.26571 3.34543 3.38834 4.36336 4.69744 5.11152 5.61592 5.66838 5.77876 5.96354 6.21627 6.29853 6.40366 6.43999 6.55270 6.61830 6.79567 7.00159 7.40467 7.80860 7.89587 8.22516 8.57231 8.92682 9.02533 9.50288 10.96640 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.078960 B = 0.014662 C = 0.013850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.524446 B = 1909.304592 C = 2021.138004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.084 0.916 4 C 0.023 3.977 5 N -0.679 5.679 6 C 0.183 3.817 7 H 0.003 0.997 8 C -0.506 4.506 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.900 5.900 12 Si 0.901 3.099 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.067 3.933 17 O -0.399 6.399 18 H 0.054 0.946 19 H 0.046 0.954 20 H 0.078 0.922 21 H 0.019 0.981 22 H 0.061 0.939 23 H 0.364 0.636 24 H 0.264 0.736 25 H 0.079 0.921 26 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 5.216 -1.502 5.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.033 3.967 3 H 0.102 0.898 4 C -0.108 4.108 5 N -0.317 5.317 6 C 0.075 3.925 7 H 0.020 0.980 8 C -0.545 4.545 9 H 0.081 0.919 10 C -0.135 4.135 11 N -0.540 5.540 12 Si 0.729 3.271 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.209 1.209 16 C -0.009 4.009 17 O -0.318 6.318 18 H 0.073 0.927 19 H 0.065 0.935 20 H 0.097 0.903 21 H 0.037 0.963 22 H 0.079 0.921 23 H 0.187 0.813 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.847 5.371 -1.750 6.325 hybrid contribution 0.555 -1.170 0.620 1.435 sum -2.292 4.201 -1.130 4.917 Atomic orbital electron populations 1.22231 0.96493 1.03700 1.00404 1.22097 0.93722 0.94906 0.85943 0.89780 1.22480 0.97001 0.94259 0.97074 1.61046 1.62595 0.99409 1.08610 1.19627 0.93681 0.92606 0.86595 0.97989 1.21088 1.32532 0.93593 1.07277 0.91948 1.25008 0.94231 0.99033 0.95232 1.69688 1.37429 1.36065 1.10834 0.86390 0.78510 0.84083 0.78089 1.19682 1.21060 1.20899 1.22849 0.98817 0.79840 0.99422 1.87878 1.76070 1.25205 1.42643 0.92659 0.93539 0.90333 0.96285 0.92057 0.81257 0.92621 0.90254 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.89 37.15 0.33 -2.64 15 2 C 0.09 1.75 3.92 -26.68 -0.10 1.65 15 3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 4 C 0.02 0.47 6.18 -3.72 -0.02 0.45 15 5 N -0.68 -16.71 5.91 -107.68 -0.64 -17.34 15 6 C 0.18 4.77 2.59 -68.75 -0.18 4.59 15 7 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 15 8 C -0.51 -13.95 8.77 -34.44 -0.30 -14.25 15 9 H 0.06 1.68 7.74 -52.48 -0.41 1.27 15 10 C 0.07 1.83 5.35 -17.82 -0.10 1.73 15 11 N -0.90 -25.38 11.49 55.43 0.64 -24.74 15 12 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 C 0.07 1.53 5.83 37.21 0.22 1.75 15 17 O -0.40 -8.71 10.64 -35.23 -0.37 -9.08 15 18 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.08 1.56 6.12 -51.92 -0.32 1.24 15 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.36 9.65 6.74 -39.29 -0.26 9.38 15 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 25 H 0.08 1.71 8.14 -51.92 -0.42 1.29 15 26 H 0.05 1.08 6.49 -51.93 -0.34 0.75 15 LS Contribution 212.83 15.07 3.21 3.21 Total: -1.00 -28.43 212.83 -5.76 -34.20 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.42 Total: 4.37 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.16 Total: -6.73 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.00 Total: -42.08 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.37 Total: -9.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -28.43 -5.76 -34.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007775.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.577 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds