Wall clock time and date at job start Mon Mar 30 2020 02:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47267 * 2 1 4 4 C 1.50705 * 109.46997 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00146 * 245.13739 * 4 2 1 6 6 C 1.37872 * 119.99425 * 65.41146 * 4 2 1 7 7 N 1.31511 * 120.00763 * 354.85280 * 6 4 2 8 8 Si 1.86810 * 119.99652 * 174.85034 * 6 4 2 9 9 H 1.48506 * 109.46911 * 95.00069 * 8 6 4 10 10 H 1.48499 * 109.47282 * 214.99761 * 8 6 4 11 11 H 1.48498 * 109.47231 * 335.00031 * 8 6 4 12 12 N 1.46898 * 109.46906 * 120.00206 * 2 1 3 13 13 C 1.47796 * 111.00068 * 299.99744 * 12 2 1 14 14 C 1.54591 * 105.24271 * 123.48673 * 13 12 2 15 15 C 1.55003 * 102.46739 * 21.06047 * 14 13 12 16 16 O 1.44570 * 102.67195 * 323.51853 * 15 14 13 17 17 H 1.09003 * 109.47614 * 55.00803 * 1 2 3 18 18 H 1.09001 * 109.47685 * 175.00955 * 1 2 3 19 19 H 1.09005 * 109.47198 * 295.01281 * 1 2 3 20 20 H 0.96999 * 120.00522 * 179.97438 * 7 6 4 21 21 H 1.08998 * 110.28748 * 242.42426 * 13 12 2 22 22 H 1.08997 * 110.28921 * 4.44147 * 13 12 2 23 23 H 1.09004 * 110.80828 * 139.31356 * 14 13 12 24 24 H 1.09005 * 110.80069 * 262.62347 * 14 13 12 25 25 H 1.09005 * 110.76797 * 81.81128 * 15 14 13 26 26 H 1.08999 * 110.77094 * 205.21516 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5830 -1.6344 -1.1336 6 6 1.7935 -0.1779 -2.4796 7 7 1.0422 0.8942 -2.6049 8 14 2.5375 -0.9792 -3.9943 9 1 1.5519 -1.9140 -4.5943 10 1 2.8924 0.0687 -4.9848 11 1 3.7595 -1.7292 -3.6078 12 7 2.0195 -0.6925 1.1994 13 6 1.5457 -0.0224 2.4285 14 6 0.7947 -1.1150 3.2235 15 6 1.3774 -2.4221 2.6280 16 8 1.5494 -2.0858 1.2325 17 1 -0.3634 0.5893 -0.8419 18 1 -0.3634 -1.0237 -0.0894 19 1 -0.3634 0.4345 0.9313 20 1 0.8746 1.2691 -3.4836 21 1 2.3917 0.3508 3.0057 22 1 0.8705 0.7955 2.1768 23 1 1.0174 -1.0414 4.2880 24 1 -0.2794 -1.0515 3.0489 25 1 2.3355 -2.6632 3.0885 26 1 0.6738 -3.2466 2.7432 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036771.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:54 Heat of formation + Delta-G solvation = -16.028423 kcal Electronic energy + Delta-G solvation = -10383.877619 eV Core-core repulsion = 8463.763844 eV Total energy + Delta-G solvation = -1920.113775 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.73233 -36.03387 -33.65609 -32.41504 -29.43162 -27.31824 -24.96171 -22.66616 -21.70856 -18.55888 -17.37431 -16.86455 -16.16061 -15.65340 -14.93720 -14.46959 -14.36821 -13.59513 -13.32010 -12.89789 -12.76193 -12.52851 -12.41500 -12.30914 -12.17801 -11.68299 -11.11181 -10.97241 -10.53222 -9.20250 -8.15058 -6.22996 1.41743 1.42082 1.55288 2.32103 2.44406 3.16042 3.63447 3.89099 4.02225 4.33961 4.56991 4.64824 4.72738 4.79239 4.84186 4.93083 5.01102 5.17091 5.37376 5.62275 5.74130 6.02280 6.17010 6.52359 6.85440 7.43403 8.92903 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.078686 B = 0.014527 C = 0.013218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.758383 B = 1927.010331 C = 2117.739313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.188 3.812 3 H 0.036 0.964 4 C -0.512 4.512 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.272 1.272 12 N -0.344 5.344 13 C -0.015 4.015 14 C -0.144 4.144 15 C 0.025 3.975 16 O -0.273 6.273 17 H 0.058 0.942 18 H 0.023 0.977 19 H 0.035 0.965 20 H 0.263 0.737 21 H 0.103 0.897 22 H 0.060 0.940 23 H 0.116 0.884 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -2.666 9.386 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.080 3.920 3 H 0.053 0.947 4 C -0.550 4.550 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.196 1.196 12 N -0.112 5.112 13 C -0.143 4.143 14 C -0.183 4.183 15 C -0.053 4.053 16 O -0.277 6.277 17 H 0.077 0.923 18 H 0.042 0.958 19 H 0.054 0.946 20 H 0.072 0.928 21 H 0.121 0.879 22 H 0.078 0.922 23 H 0.134 0.866 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.253 -2.700 9.029 9.428 hybrid contribution -0.694 0.001 -0.786 1.048 sum -0.946 -2.699 8.243 8.725 Atomic orbital electron populations 1.22030 0.99132 0.99372 0.99618 1.19657 0.91544 0.92972 0.87828 0.94653 1.21209 1.34475 1.08279 0.91078 0.93306 1.25712 0.95557 0.95855 1.01789 1.70008 1.38421 1.23355 1.24391 0.85458 0.78770 0.78138 0.78747 1.20319 1.20188 1.19623 1.70591 1.46938 0.90013 1.03646 1.23833 1.00279 0.97942 0.92286 1.23392 1.00185 0.92708 1.02008 1.23840 1.00833 0.97758 0.82833 1.91842 1.90122 1.21005 1.24764 0.92320 0.95774 0.94572 0.92754 0.87862 0.92201 0.86578 0.91047 0.91052 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.22 8.56 71.98 0.62 -6.60 15 2 C 0.19 10.09 2.29 44.17 0.10 10.19 15 3 H 0.04 2.05 8.14 -2.39 -0.02 2.03 15 4 C -0.51 -30.41 8.32 25.60 0.21 -30.19 15 5 H 0.05 3.01 7.68 -2.91 -0.02 2.99 15 6 C 0.01 0.53 5.36 84.65 0.45 0.98 15 7 N -0.92 -54.35 11.58 21.44 0.25 -54.10 15 8 Si 0.96 45.78 29.54 68.60 2.03 47.80 15 9 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 11 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 12 N -0.34 -16.00 5.74 -490.45 -2.81 -18.82 15 13 C -0.02 -0.53 6.46 86.67 0.56 0.03 15 14 C -0.14 -3.95 7.12 31.82 0.23 -3.73 15 15 C 0.03 0.79 7.94 72.67 0.58 1.37 15 16 O -0.27 -12.55 10.77 -52.23 -0.56 -13.11 15 17 H 0.06 3.23 6.45 -2.39 -0.02 3.21 15 18 H 0.02 1.23 7.80 -2.39 -0.02 1.21 15 19 H 0.04 1.57 6.19 -2.38 -0.01 1.56 15 20 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 21 H 0.10 3.11 8.14 -2.39 -0.02 3.09 15 22 H 0.06 2.14 6.04 -2.39 -0.01 2.12 15 23 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.07 1.95 8.14 -2.38 -0.02 1.93 15 25 H 0.07 2.02 8.14 -2.38 -0.02 2.00 15 26 H 0.11 2.79 8.14 -2.39 -0.02 2.77 15 Total: -1.00 -66.03 216.33 2.79 -63.24 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.15 Total: 2.93 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 2.75 Total: -27.94 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -2.57 Total: -72.91 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.56 Total: -13.11 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -66.03 2.79 -63.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036771.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.207 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds