Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 C 1.50701 * 109.47029 * 120.00019 * 2 1 3 5 5 H 1.07998 * 120.00099 * 120.00357 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00138 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47191 * 119.99785 * 8 6 4 11 11 H 1.48494 * 109.47204 * 240.00116 * 8 6 4 12 12 N 1.46906 * 109.47378 * 239.99874 * 2 1 3 13 13 C 1.47794 * 110.99821 * 60.00116 * 12 2 1 14 14 C 1.54592 * 105.24461 * 123.47825 * 13 12 2 15 15 C 1.55012 * 102.46045 * 21.06724 * 14 13 12 16 16 O 1.44570 * 102.67271 * 323.50712 * 15 14 13 17 17 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.47715 * 300.00076 * 1 2 3 19 19 H 1.09004 * 109.46862 * 60.00023 * 1 2 3 20 20 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 21 21 H 1.08994 * 110.29228 * 242.42428 * 13 12 2 22 22 H 1.09007 * 110.29090 * 4.44509 * 13 12 2 23 23 H 1.09005 * 110.80670 * 139.30343 * 14 13 12 24 24 H 1.08994 * 110.81516 * 262.62811 * 14 13 12 25 25 H 1.08997 * 110.76721 * 81.80856 * 15 14 13 26 26 H 1.09007 * 110.76479 * 205.02660 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3211 -1.1204 4.0080 9 1 3.1463 -2.2870 3.6039 10 1 3.1464 -0.1875 4.8166 11 1 1.1659 -1.5867 4.8160 12 7 2.0197 -0.6925 -1.1994 13 6 1.5458 -0.0224 -2.4285 14 6 2.8263 0.3216 -3.2234 15 6 3.8644 -0.6636 -2.6280 16 8 3.4901 -0.7136 -1.2325 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 0.7087 1.1614 3.4843 21 1 0.9120 -0.6954 -3.0057 22 1 0.9999 0.8870 -2.1768 23 1 2.6828 0.1361 -4.2880 24 1 3.1246 1.3553 -3.0489 25 1 3.7722 -1.6472 -3.0885 26 1 4.8766 -0.2765 -2.7460 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = 4.866779 kcal Electronic energy + Delta-G solvation = -10307.417583 eV Core-core repulsion = 8388.209892 eV Total energy + Delta-G solvation = -1919.207691 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.03565 -34.20356 -31.78935 -30.79852 -27.65972 -25.21409 -23.28600 -21.38085 -19.53120 -16.58165 -15.65495 -15.32300 -14.32380 -14.18587 -13.14851 -12.87663 -12.56427 -11.70118 -11.53422 -11.25602 -10.99066 -10.74844 -10.57124 -10.34413 -10.32531 -9.88642 -9.57557 -8.94612 -8.38734 -7.44902 -5.96794 -3.98344 3.35814 3.42671 3.50405 3.90111 4.48798 5.05305 5.18520 5.26696 5.37675 5.63463 5.92244 6.03664 6.12257 6.18697 6.40815 6.67085 6.93247 6.99683 7.27218 7.55411 7.85453 7.95413 8.20135 8.51151 9.08661 9.64803 11.11377 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069232 B = 0.014825 C = 0.012939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.337519 B = 1888.289900 C = 2163.403544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.187 3.813 3 H 0.010 0.990 4 C -0.487 4.487 5 H 0.068 0.932 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.327 5.327 13 C -0.004 4.004 14 C -0.160 4.160 15 C 0.036 3.964 16 O -0.238 6.238 17 H 0.039 0.961 18 H 0.095 0.905 19 H 0.011 0.989 20 H 0.259 0.741 21 H 0.082 0.918 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -0.602 -8.369 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 H 0.028 0.972 4 C -0.526 4.526 5 H 0.086 0.914 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.096 5.096 13 C -0.133 4.133 14 C -0.199 4.199 15 C -0.043 4.043 16 O -0.241 6.241 17 H 0.058 0.942 18 H 0.114 0.886 19 H 0.030 0.970 20 H 0.069 0.931 21 H 0.100 0.900 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.365 -1.021 -7.989 8.169 hybrid contribution 0.420 0.620 0.565 0.938 sum 1.785 -0.401 -7.424 7.646 Atomic orbital electron populations 1.21847 0.96131 1.00257 1.00665 1.19796 0.92307 0.93166 0.86733 0.97230 1.21074 1.30084 1.12307 0.89113 0.91423 1.24943 0.95389 0.95206 0.99127 1.69884 1.37606 1.23300 1.23328 0.86370 0.78513 0.79663 0.82491 1.19614 1.21176 1.21081 1.70661 0.87777 1.47972 1.03174 1.23666 0.96969 0.99092 0.93600 1.23444 0.95646 1.00459 1.00348 1.23467 0.97652 0.97807 0.85401 1.91905 1.15036 1.96371 1.20806 0.94219 0.88639 0.97017 0.93077 0.90013 0.91917 0.90615 0.91135 0.92420 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.84 37.15 0.33 -2.90 15 2 C 0.19 5.03 2.11 -68.86 -0.15 4.88 15 3 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 4 C -0.49 -14.34 8.36 -34.44 -0.29 -14.63 15 5 H 0.07 2.05 7.76 -52.49 -0.41 1.65 15 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 15 7 N -0.90 -26.39 11.32 55.43 0.63 -25.77 15 8 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 15 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 12 N -0.33 -7.78 5.63 -106.36 -0.60 -8.38 15 13 C 0.00 -0.08 6.31 -2.50 -0.02 -0.10 15 14 C -0.16 -2.49 7.12 -24.83 -0.18 -2.66 15 15 C 0.04 0.61 7.94 38.22 0.30 0.91 15 16 O -0.24 -5.65 11.52 -14.37 -0.17 -5.82 15 17 H 0.04 0.96 8.14 -51.93 -0.42 0.53 15 18 H 0.10 2.56 6.07 -51.93 -0.32 2.25 15 19 H 0.01 0.24 6.52 -51.93 -0.34 -0.10 15 20 H 0.26 7.19 8.31 -40.82 -0.34 6.86 15 21 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.06 1.19 6.42 -51.92 -0.33 0.85 15 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 26 H 0.08 1.22 8.14 -51.92 -0.42 0.79 15 LS Contribution 217.37 15.07 3.28 3.28 Total: -1.00 -31.09 217.37 -5.46 -36.55 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -3.49 Total: -4.09 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -0.09 Total: -13.04 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.03 Total: -34.14 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.17 Total: -5.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -31.09 -5.46 -36.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.420 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds