Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 C 1.50701 * 109.47029 * 120.00019 * 2 1 3 5 5 H 1.07998 * 120.00099 * 120.00357 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00138 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47191 * 119.99785 * 8 6 4 11 11 H 1.48494 * 109.47204 * 240.00116 * 8 6 4 12 12 N 1.46906 * 109.47378 * 239.99874 * 2 1 3 13 13 C 1.47794 * 110.99821 * 60.00116 * 12 2 1 14 14 C 1.54592 * 105.24461 * 123.47825 * 13 12 2 15 15 C 1.55012 * 102.46045 * 21.06724 * 14 13 12 16 16 O 1.44570 * 102.67271 * 323.50712 * 15 14 13 17 17 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.47715 * 300.00076 * 1 2 3 19 19 H 1.09004 * 109.46862 * 60.00023 * 1 2 3 20 20 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 21 21 H 1.08994 * 110.29228 * 242.42428 * 13 12 2 22 22 H 1.09007 * 110.29090 * 4.44509 * 13 12 2 23 23 H 1.09005 * 110.80670 * 139.30343 * 14 13 12 24 24 H 1.08994 * 110.81516 * 262.62811 * 14 13 12 25 25 H 1.08997 * 110.76721 * 81.80856 * 15 14 13 26 26 H 1.09007 * 110.76479 * 205.02660 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3211 -1.1204 4.0080 9 1 3.1463 -2.2870 3.6039 10 1 3.1464 -0.1875 4.8166 11 1 1.1659 -1.5867 4.8160 12 7 2.0197 -0.6925 -1.1994 13 6 1.5458 -0.0224 -2.4285 14 6 2.8263 0.3216 -3.2234 15 6 3.8644 -0.6636 -2.6280 16 8 3.4901 -0.7136 -1.2325 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 0.7087 1.1614 3.4843 21 1 0.9120 -0.6954 -3.0057 22 1 0.9999 0.8870 -2.1768 23 1 2.6828 0.1361 -4.2880 24 1 3.1246 1.3553 -3.0489 25 1 3.7722 -1.6472 -3.0885 26 1 4.8766 -0.2765 -2.7460 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = -17.147228 kcal Electronic energy + Delta-G solvation = -10308.372182 eV Core-core repulsion = 8388.209892 eV Total energy + Delta-G solvation = -1920.162290 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.65407 -36.18759 -33.71955 -32.42211 -29.45035 -27.34691 -24.92901 -22.88988 -21.38658 -18.58864 -17.50332 -16.92083 -16.27337 -15.85561 -14.78749 -14.64773 -14.25161 -13.45558 -13.26844 -12.92319 -12.87398 -12.59898 -12.39491 -12.25127 -12.05698 -11.79651 -11.16955 -11.00201 -10.55378 -9.26882 -8.15421 -6.25686 1.40627 1.41026 1.55514 2.24299 2.43692 3.14179 3.59840 3.85490 3.99372 4.31604 4.53701 4.67566 4.73203 4.77502 4.87075 4.93307 5.03140 5.14022 5.30086 5.64128 5.73253 6.03218 6.15060 6.48813 6.83647 7.41430 8.91679 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069232 B = 0.014825 C = 0.012939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.337519 B = 1888.289900 C = 2163.403544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.191 3.809 3 H -0.029 1.029 4 C -0.514 4.514 5 H 0.048 0.952 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.272 1.272 12 N -0.342 5.342 13 C -0.013 4.013 14 C -0.147 4.147 15 C 0.025 3.975 16 O -0.281 6.281 17 H 0.039 0.961 18 H 0.071 0.929 19 H 0.041 0.959 20 H 0.264 0.736 21 H 0.107 0.893 22 H 0.057 0.943 23 H 0.119 0.881 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -0.973 -9.304 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H -0.011 1.011 4 C -0.552 4.552 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.791 3.209 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.197 1.197 12 N -0.111 5.111 13 C -0.141 4.141 14 C -0.186 4.186 15 C -0.053 4.053 16 O -0.285 6.285 17 H 0.058 0.942 18 H 0.090 0.910 19 H 0.060 0.940 20 H 0.073 0.927 21 H 0.125 0.875 22 H 0.075 0.925 23 H 0.138 0.862 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.520 -1.390 -8.947 9.181 hybrid contribution 0.411 0.746 0.754 1.138 sum 1.931 -0.643 -8.193 8.442 Atomic orbital electron populations 1.21641 0.94820 1.00218 1.00949 1.19598 0.93351 0.90873 0.87823 1.01113 1.21264 1.30707 1.12289 0.90965 0.93332 1.25735 0.95388 0.95899 1.01926 1.69989 1.37902 1.24075 1.24248 0.85382 0.78283 0.78457 0.78766 1.19764 1.20419 1.19733 1.70474 0.88458 1.48412 1.03721 1.23859 0.98764 0.99212 0.92270 1.23426 0.92974 0.99940 1.02254 1.23856 0.99372 0.99455 0.82596 1.91853 1.14826 1.96681 1.25141 0.94220 0.91004 0.94031 0.92674 0.87474 0.92501 0.86244 0.91181 0.90825 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.84 71.98 0.64 -5.21 15 2 C 0.19 10.49 2.11 44.17 0.09 10.59 15 3 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 15 4 C -0.51 -30.91 8.36 25.60 0.21 -30.69 15 5 H 0.05 3.03 7.76 -2.91 -0.02 3.01 15 6 C 0.01 0.50 5.30 84.66 0.45 0.95 15 7 N -0.92 -54.58 11.32 21.45 0.24 -54.33 15 8 Si 0.97 45.95 29.54 68.60 2.03 47.97 15 9 H -0.27 -12.93 7.11 99.48 0.71 -12.23 15 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 12 N -0.34 -16.21 5.63 -490.43 -2.76 -18.97 15 13 C -0.01 -0.45 6.31 86.67 0.55 0.10 15 14 C -0.15 -4.12 7.12 31.82 0.23 -3.90 15 15 C 0.03 0.80 7.94 72.67 0.58 1.38 15 16 O -0.28 -13.33 11.52 -52.25 -0.60 -13.94 15 17 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 18 H 0.07 3.90 6.07 -2.39 -0.01 3.89 15 19 H 0.04 1.75 6.52 -2.38 -0.02 1.73 15 20 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 21 H 0.11 3.23 8.14 -2.39 -0.02 3.21 15 22 H 0.06 2.07 6.42 -2.38 -0.02 2.06 15 23 H 0.12 2.32 8.14 -2.38 -0.02 2.31 15 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.11 2.88 8.14 -2.38 -0.02 2.86 15 Total: -1.00 -67.72 217.37 2.80 -64.93 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 1.15 Total: 1.12 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 2.74 Total: -26.79 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -2.52 Total: -73.30 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.60 Total: -13.94 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -67.72 2.80 -64.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.781 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds