Wall clock time and date at job start Mon Mar 30 2020 01:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86806 * 119.99627 * 2 1 4 4 H 1.48503 * 109.46872 * 239.99649 * 3 2 1 5 5 H 1.48496 * 109.47334 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47123 * 120.00180 * 3 2 1 7 7 C 1.40159 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.39852 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.39418 * 126.87446 * 179.97438 * 9 7 2 11 11 N 1.33324 * 107.08239 * 180.02562 * 10 9 7 12 12 C 1.30798 * 109.25623 * 359.97438 * 11 10 9 13 13 C 1.50696 * 125.15788 * 180.02562 * 12 11 10 14 14 F 1.39903 * 109.47386 * 89.97201 * 13 12 11 15 15 O 1.34014 * 109.69177 * 0.02562 * 12 11 10 16 16 H 0.97005 * 120.00343 * 359.97438 * 1 2 3 17 17 H 1.08003 * 126.45915 * 0.04775 * 10 9 7 18 18 H 1.08999 * 109.47373 * 209.97786 * 13 12 11 19 19 H 1.09004 * 109.47072 * 329.97355 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0957 1.6965 -1.2125 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6965 1.2124 7 6 2.0088 -1.2138 0.0005 8 1 3.0888 -1.2138 0.0001 9 6 1.3096 -2.4250 0.0005 10 6 1.8572 -3.7071 0.0005 11 7 0.8391 -4.5679 0.0000 12 6 -0.2875 -3.9034 0.0002 13 6 -1.6609 -4.5237 0.0002 14 9 -2.0855 -4.7165 1.3193 15 8 -0.0355 -2.5871 0.0003 16 1 -0.4851 0.8401 0.0004 17 1 2.9082 -3.9561 0.0013 18 1 -2.3585 -3.8620 -0.5131 19 1 -1.6258 -5.4841 -0.5141 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038056.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:30 Heat of formation + Delta-G solvation = -77.673751 kcal Electronic energy + Delta-G solvation = -9519.129446 eV Core-core repulsion = 7337.049129 eV Total energy + Delta-G solvation = -2182.080317 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 171.044 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -48.62568 -43.00101 -35.93716 -34.80017 -32.09721 -29.49062 -25.89998 -22.68072 -22.01223 -19.56911 -17.74915 -17.33750 -17.08383 -16.52505 -15.99011 -15.59895 -15.01841 -14.03789 -13.34972 -13.04540 -12.92874 -12.64338 -12.15946 -12.03069 -11.76261 -11.40897 -11.03468 -9.65659 -8.93287 -6.72918 0.97458 1.36960 1.54099 1.58788 2.11309 2.12117 2.59397 3.02324 3.59994 3.92045 4.23775 4.66263 4.81612 4.91063 5.03355 5.46361 5.94904 6.11327 6.36388 6.46901 7.48202 8.08517 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.082318 B = 0.014150 C = 0.012467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.064180 B = 1978.383190 C = 2245.378087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.018 3.982 3 Si 1.016 2.984 4 H -0.249 1.249 5 H -0.264 1.264 6 H -0.251 1.251 7 C -0.453 4.453 8 H 0.127 0.873 9 C 0.149 3.851 10 C -0.257 4.257 11 N -0.448 5.448 12 C -0.054 4.054 13 C 0.194 3.806 14 F -0.225 7.225 15 O -0.208 6.208 16 H 0.300 0.700 17 H 0.169 0.831 18 H 0.111 0.889 19 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 2.196 -1.354 2.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.201 4.201 3 Si 0.833 3.167 4 H -0.172 1.172 5 H -0.188 1.188 6 H -0.175 1.175 7 C -0.481 4.481 8 H 0.145 0.855 9 C 0.094 3.906 10 C -0.403 4.403 11 N -0.177 5.177 12 C -0.253 4.253 13 C 0.138 3.862 14 F -0.206 7.206 15 O -0.097 6.097 16 H 0.111 0.889 17 H 0.187 0.813 18 H 0.129 0.871 19 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.998 1.615 -1.326 2.316 hybrid contribution 0.287 1.118 0.151 1.164 sum -0.711 2.733 -1.175 3.059 Atomic orbital electron populations 1.69828 1.09719 1.32328 1.31091 1.27429 0.95941 1.06166 0.90588 0.84740 0.78269 0.72823 0.80885 1.17226 1.18839 1.17485 1.19380 0.95925 0.87670 1.45076 0.85511 1.21246 0.79290 0.96811 0.93233 1.23194 0.98257 0.88262 1.30580 1.69277 0.98737 1.36654 1.13032 1.26282 0.98251 0.79330 1.21440 1.19924 0.85252 1.02046 0.78931 1.92753 1.90446 1.96716 1.40713 1.84683 1.25161 1.26468 1.73429 0.88878 0.81347 0.87124 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.94 12.06 21.87 0.26 -41.68 13 2 C 0.02 0.86 5.50 85.31 0.47 1.33 13 3 Si 1.02 35.05 29.56 68.60 2.03 37.08 13 4 H -0.25 -8.10 7.11 99.48 0.71 -7.39 13 5 H -0.26 -8.61 7.11 99.48 0.71 -7.90 13 6 H -0.25 -8.28 7.11 99.48 0.71 -7.57 13 7 C -0.45 -23.87 9.35 23.13 0.22 -23.65 13 8 H 0.13 5.98 7.85 -2.91 -0.02 5.96 13 9 C 0.15 8.62 6.83 22.95 0.16 8.78 13 10 C -0.26 -14.16 11.99 84.75 1.02 -13.14 13 11 N -0.45 -24.45 11.23 -300.14 -3.37 -27.82 13 12 C -0.05 -2.81 8.01 88.26 0.71 -2.11 13 13 C 0.19 7.49 8.17 71.23 0.58 8.07 13 14 F -0.22 -9.36 17.34 44.97 0.78 -8.58 13 15 O -0.21 -12.24 9.17 -11.82 -0.11 -12.35 13 16 H 0.30 13.82 8.30 -92.70 -0.77 13.05 13 17 H 0.17 8.30 8.06 -2.91 -0.02 8.28 13 18 H 0.11 3.66 8.14 -2.39 -0.02 3.64 13 19 H 0.13 4.02 8.14 -2.39 -0.02 4.00 13 Total: -1.00 -66.02 191.02 4.01 -62.01 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.27 Total: 12.06 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.15 Total: -20.72 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -3.11 Total: -69.50 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.11 Total: -12.35 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.78 Total: -8.58 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Total: -66.02 4.01 -62.01 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038056.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.661 kcal (2) G-P(sol) polarization free energy of solvation -66.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds