Wall clock time and date at job start Mon Mar 30 2020 01:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86803 * 120.00228 * 2 1 4 4 H 1.48498 * 109.47169 * 269.99695 * 3 2 1 5 5 H 1.48497 * 109.47209 * 29.99601 * 3 2 1 6 6 H 1.48504 * 109.47007 * 150.00164 * 3 2 1 7 7 C 1.40340 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.39801 * 120.00203 * 0.02562 * 7 2 1 10 10 N 1.32810 * 125.79774 * 179.97438 * 9 7 2 11 11 C 1.33065 * 108.64417 * 179.76423 * 10 9 7 12 12 C 1.50705 * 126.00846 * 180.30532 * 11 10 9 13 13 F 1.39905 * 109.46848 * 270.15720 * 12 11 10 14 14 C 1.35931 * 107.98427 * 0.44028 * 11 10 9 15 15 O 1.34596 * 107.35600 * 359.56576 * 14 11 10 16 16 H 0.97002 * 119.99610 * 0.02562 * 1 2 3 17 17 H 1.08998 * 109.47210 * 30.15532 * 12 11 10 18 18 H 1.08997 * 109.47293 * 150.15501 * 12 11 10 19 19 H 1.08002 * 126.32545 * 179.83533 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 -1.4000 5 1 1.4378 2.6527 0.6999 6 1 3.5379 1.4401 0.7000 7 6 2.0079 -1.2154 0.0005 8 1 3.0879 -1.2154 0.0010 9 6 1.3088 -2.4261 0.0005 10 7 1.8533 -3.6375 0.0005 11 6 0.8777 -4.5424 0.0057 12 6 1.0571 -6.0387 0.0141 13 9 1.1161 -6.5086 -1.3024 14 6 -0.3092 -3.8799 -0.0009 15 8 -0.0337 -2.5624 -0.0004 16 1 -0.4850 0.8401 -0.0004 17 1 1.9827 -6.2907 0.5316 18 1 0.2155 -6.5027 0.5282 19 1 -1.2920 -4.3279 -0.0015 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168581.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:28 Heat of formation + Delta-G solvation = -75.708807 kcal Electronic energy + Delta-G solvation = -9456.418372 eV Core-core repulsion = 7274.423261 eV Total energy + Delta-G solvation = -2181.995111 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 171.044 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -48.56861 -43.05743 -35.79483 -35.06693 -31.86748 -28.83156 -26.61470 -22.85308 -21.72659 -19.51376 -17.47076 -17.11480 -16.91488 -16.41715 -16.19720 -16.01453 -14.94967 -14.14812 -13.43885 -13.01127 -12.90935 -12.42574 -12.01596 -11.90689 -11.69884 -11.33230 -10.74875 -9.60276 -8.87847 -6.81514 1.03128 1.39403 1.49661 1.58376 2.09532 2.16701 2.87352 3.13681 3.65194 4.00032 4.03494 4.64991 4.79863 4.90007 5.01626 5.64991 5.78664 6.05810 6.47564 6.53034 7.69056 8.17098 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.116197 B = 0.012406 C = 0.011576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 240.912099 B = 2256.382960 C = 2418.172006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.026 3.974 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.251 1.251 7 C -0.461 4.461 8 H 0.113 0.887 9 C 0.311 3.689 10 N -0.637 5.637 11 C -0.057 4.057 12 C 0.159 3.841 13 F -0.227 7.227 14 C -0.198 4.198 15 O -0.210 6.210 16 H 0.300 0.700 17 H 0.092 0.908 18 H 0.125 0.875 19 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -1.362 1.335 1.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.193 4.193 3 Si 0.835 3.165 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.174 1.174 7 C -0.496 4.496 8 H 0.131 0.869 9 C 0.127 3.873 10 N -0.372 5.372 11 C -0.181 4.181 12 C 0.104 3.896 13 F -0.209 7.209 14 C -0.272 4.272 15 O -0.102 6.102 16 H 0.111 0.889 17 H 0.111 0.889 18 H 0.143 0.857 19 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.084 -1.376 1.307 1.900 hybrid contribution -0.688 0.528 -0.135 0.878 sum -0.604 -0.849 1.172 1.568 Atomic orbital electron populations 1.69751 1.09479 1.32115 1.32325 1.27280 0.95960 1.05617 0.90430 0.84671 0.78627 0.73114 0.80054 1.18023 1.18250 1.17408 1.18863 0.95344 0.86736 1.48682 0.86901 1.22698 0.77251 0.94462 0.92905 1.70777 1.32712 0.98658 1.35077 1.22553 0.90427 0.98279 1.06801 1.20186 1.05679 0.84982 0.78709 1.92727 1.98220 1.89096 1.40829 1.25058 1.00878 0.81620 1.19596 1.84814 1.26715 1.25642 1.73059 0.88934 0.88929 0.85667 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.93 11.98 21.89 0.26 -42.66 13 2 C 0.03 1.34 5.50 85.38 0.47 1.81 13 3 Si 1.02 36.84 29.56 68.60 2.03 38.87 13 4 H -0.26 -8.85 7.11 99.48 0.71 -8.14 13 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 13 6 H -0.25 -8.74 7.11 99.48 0.71 -8.03 13 7 C -0.46 -26.08 9.45 23.16 0.22 -25.86 13 8 H 0.11 6.07 7.85 -2.91 -0.02 6.05 13 9 C 0.31 18.74 7.66 84.92 0.65 19.39 13 10 N -0.64 -36.85 11.35 -297.41 -3.37 -40.23 13 11 C -0.06 -2.79 6.82 41.84 0.29 -2.50 13 12 C 0.16 5.73 8.09 71.24 0.58 6.30 13 13 F -0.23 -8.93 17.34 44.97 0.78 -8.15 13 14 C -0.20 -9.73 12.13 67.28 0.82 -8.92 13 15 O -0.21 -12.35 9.06 -11.79 -0.11 -12.45 13 16 H 0.30 13.93 8.29 -92.71 -0.77 13.16 13 17 H 0.09 3.06 8.14 -2.39 -0.02 3.04 13 18 H 0.13 3.30 8.14 -2.39 -0.02 3.28 13 19 H 0.22 8.35 8.06 -2.91 -0.02 8.32 13 Total: -1.00 -68.53 190.75 3.87 -64.66 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.27 Total: 9.75 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 3.02 Total: -9.78 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.11 Total: -82.89 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.11 Total: -12.45 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 0.78 Total: -8.15 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -68.53 3.87 -64.66 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168581.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.053 kcal (2) G-P(sol) polarization free energy of solvation -68.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds