Wall clock time and date at job start Mon Mar 30 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48503 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47628 * 300.00309 * 3 2 1 6 6 H 1.48501 * 109.46953 * 60.00455 * 3 2 1 7 7 C 1.37874 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00323 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.54283 * 300.16936 * 9 7 2 11 11 C 1.54429 * 109.54228 * 179.97438 * 9 7 2 12 12 O 1.36477 * 111.41744 * 164.20449 * 11 9 7 13 13 C 1.43660 * 117.38986 * 61.36121 * 12 11 9 14 14 C 1.51038 * 107.96773 * 279.19837 * 13 12 11 15 15 C 1.53420 * 111.70140 * 91.89014 * 14 13 12 16 16 N 1.44809 * 109.53952 * 60.41253 * 9 7 2 17 17 H 0.96998 * 120.00199 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.09199 * 43.70865 * 11 9 7 19 19 H 1.09001 * 109.09620 * 284.70504 * 11 9 7 20 20 H 1.09002 * 109.77000 * 38.83214 * 13 12 11 21 21 H 1.08995 * 109.77216 * 159.56521 * 13 12 11 22 22 H 1.08993 * 109.02670 * 212.55644 * 14 13 12 23 23 H 1.09003 * 109.02868 * 331.39574 * 14 13 12 24 24 H 1.09002 * 108.94862 * 198.16323 * 15 14 13 25 25 H 1.09008 * 108.82968 * 79.52174 * 15 14 13 26 26 H 1.00903 * 110.99950 * 86.99054 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6221 -2.5570 0.8878 11 6 2.2532 -3.6741 -0.0018 12 8 1.6467 -4.8468 0.3440 13 6 0.5876 -5.3183 -0.5044 14 6 -0.6720 -4.5705 -0.1365 15 6 -0.8507 -3.3068 -0.9879 16 7 0.4250 -2.5814 -1.1870 17 1 -0.4850 0.8400 0.0004 18 1 3.0517 -3.4625 0.7094 19 1 2.6828 -3.7753 -0.9985 20 1 0.8383 -5.1274 -1.5479 21 1 0.4400 -6.3872 -0.3505 22 1 -1.5304 -5.2254 -0.2854 23 1 -0.6221 -4.2856 0.9144 24 1 -1.5613 -2.6444 -0.4936 25 1 -1.2510 -3.5918 -1.9610 26 1 0.9432 -2.9664 -1.9625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261242098.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:15 Heat of formation + Delta-G solvation = -64.220518 kcal Electronic energy + Delta-G solvation = -10499.224435 eV Core-core repulsion = 8577.020894 eV Total energy + Delta-G solvation = -1922.203541 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.57812 -36.35153 -34.71391 -32.86638 -28.89031 -27.02328 -25.91144 -22.60108 -21.17801 -18.69342 -17.32432 -16.81545 -16.75048 -16.17762 -16.07186 -14.39161 -14.29357 -13.90488 -13.51650 -12.85811 -12.78213 -12.68854 -12.34726 -11.96170 -11.62872 -11.42398 -11.09064 -10.52021 -10.33303 -8.53923 -7.93419 -6.15761 1.43675 1.45467 1.56260 2.48344 3.02314 3.24400 3.91420 4.02301 4.13341 4.35593 4.51271 4.55399 4.59577 4.78638 4.93143 5.07172 5.24779 5.30754 5.38112 5.79272 6.24517 6.62283 6.71899 7.09066 7.25807 7.56541 9.08597 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.076377 B = 0.015675 C = 0.013727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.515828 B = 1785.897869 C = 2039.267907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.032 3.968 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.200 3.800 10 H 0.000 1.000 11 C 0.055 3.945 12 O -0.406 6.406 13 C 0.065 3.935 14 C -0.177 4.177 15 C 0.071 3.929 16 N -0.680 5.680 17 H 0.253 0.747 18 H 0.082 0.918 19 H 0.033 0.967 20 H 0.056 0.944 21 H 0.118 0.882 22 H 0.095 0.905 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -7.609 -2.372 7.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.170 4.170 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.091 3.909 10 H 0.018 0.982 11 C -0.025 4.025 12 O -0.325 6.325 13 C -0.010 4.010 14 C -0.217 4.217 15 C -0.059 4.059 16 N -0.310 5.310 17 H 0.062 0.938 18 H 0.100 0.900 19 H 0.051 0.949 20 H 0.074 0.926 21 H 0.136 0.864 22 H 0.114 0.886 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.145 -7.002 -2.086 7.307 hybrid contribution 0.406 0.462 -0.062 0.618 sum 0.260 -6.540 -2.148 6.889 Atomic orbital electron populations 1.70199 1.07269 1.26159 1.48838 1.25681 0.95429 1.01979 0.93937 0.85638 0.79198 0.80121 0.77255 1.19100 1.20941 1.20951 1.21374 0.92468 0.91812 1.52791 0.92866 1.19489 0.90017 0.92564 0.88830 0.98226 1.22492 0.95857 0.84926 0.99218 1.86387 1.51817 1.39656 1.54625 1.22584 0.85492 0.99149 0.93807 1.22629 0.99842 0.98629 1.00603 1.22144 0.93055 0.91921 0.98754 1.59414 1.06515 1.57017 1.08055 0.93818 0.89953 0.94917 0.92615 0.86432 0.88611 0.93939 0.94702 0.90877 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.05 12.79 21.45 0.27 -52.78 15 2 C 0.03 1.84 5.39 84.65 0.46 2.29 15 3 Si 0.95 44.52 29.54 68.60 2.03 46.54 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 7 C -0.55 -30.67 8.70 25.60 0.22 -30.45 15 8 H 0.05 2.91 7.75 -2.91 -0.02 2.89 15 9 C 0.20 10.23 2.03 45.04 0.09 10.32 15 10 H 0.00 -0.01 7.02 -2.39 -0.02 -0.03 15 11 C 0.05 2.35 5.72 72.47 0.41 2.77 15 12 O -0.41 -16.10 10.04 -99.05 -0.99 -17.10 15 13 C 0.07 2.06 6.48 71.34 0.46 2.52 15 14 C -0.18 -6.07 5.40 30.10 0.16 -5.90 15 15 C 0.07 2.86 6.51 86.22 0.56 3.42 15 16 N -0.68 -32.22 5.42 -493.87 -2.68 -34.90 15 17 H 0.25 14.43 8.31 -92.71 -0.77 13.66 15 18 H 0.08 3.55 8.03 -2.39 -0.02 3.53 15 19 H 0.03 1.32 7.71 -2.39 -0.02 1.31 15 20 H 0.06 1.67 7.14 -2.39 -0.02 1.65 15 21 H 0.12 2.87 8.14 -2.39 -0.02 2.85 15 22 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.04 1.70 7.30 -2.39 -0.02 1.69 15 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.07 2.49 8.14 -2.38 -0.02 2.47 15 26 H 0.32 13.71 7.54 -89.69 -0.68 13.03 15 Total: -1.00 -63.57 212.70 1.49 -62.08 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.48 Total: 11.17 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 2.37 Total: -15.03 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -2.40 Total: -87.67 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.99 Total: -17.10 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.57 1.49 -62.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242098.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.137 kcal (2) G-P(sol) polarization free energy of solvation -63.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds