Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.09003 * 108.89325 * 61.35401 * 9 7 2 11 11 C 1.46267 * 108.91175 * 179.97438 * 9 7 2 12 12 O 1.44513 * 111.31063 * 180.21381 * 11 9 7 13 13 C 1.39906 * 112.81434 * 280.45197 * 12 11 9 14 14 C 1.54579 * 113.22652 * 94.89401 * 13 12 11 15 15 C 1.54617 * 110.90197 * 319.29429 * 14 13 12 16 16 N 1.44012 * 112.48409 * 319.61109 * 15 14 13 17 17 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.11413 * 300.69269 * 11 9 7 19 19 H 1.09005 * 109.10837 * 59.74952 * 11 9 7 20 20 H 1.08999 * 108.73114 * 215.86761 * 13 12 11 21 21 H 1.09002 * 108.72573 * 334.05146 * 13 12 11 22 22 H 1.09002 * 109.18615 * 79.65934 * 14 13 12 23 23 H 1.08996 * 109.18745 * 198.92647 * 14 13 12 24 24 H 1.09001 * 108.88301 * 80.38625 * 15 14 13 25 25 H 1.09004 * 108.87972 * 198.93798 * 15 14 13 26 26 H 1.00906 * 110.99908 * 331.43913 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8648 -0.6997 0.9039 11 6 3.9858 -2.5776 -0.0010 12 8 5.4296 -2.6379 0.0035 13 6 5.9854 -2.4256 -1.2628 14 6 6.3960 -0.9559 -1.5097 15 6 5.3367 0.0159 -0.9402 16 7 3.9903 -0.4369 -1.1768 17 1 -0.4849 0.8401 -0.0004 18 1 3.6045 -3.0854 0.8849 19 1 3.6103 -3.0836 -0.8905 20 1 6.8669 -3.0579 -1.3687 21 1 5.2551 -2.7149 -2.0185 22 1 7.3539 -0.7655 -1.0257 23 1 6.4972 -0.7875 -2.5818 24 1 5.4914 0.1162 0.1341 25 1 5.4663 0.9921 -1.4075 26 1 3.9393 -0.9984 -2.0137 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261242100.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = -32.603089 kcal Electronic energy + Delta-G solvation = -10569.735141 eV Core-core repulsion = 8648.902634 eV Total energy + Delta-G solvation = -1920.832507 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.11609 -34.97141 -33.04418 -31.41661 -27.66583 -25.49419 -24.14514 -20.37647 -20.24481 -17.20957 -15.91816 -15.35234 -15.00016 -14.42016 -13.77831 -13.34750 -12.80383 -12.41066 -12.14083 -11.66309 -10.80644 -10.76015 -10.63423 -10.22240 -10.07954 -9.54556 -9.14973 -9.02288 -8.47471 -7.06611 -5.98741 -4.08920 3.53540 3.63291 3.91466 4.37348 4.73780 5.10772 5.25563 5.30463 5.47256 5.60126 5.84577 5.90636 6.07260 6.22037 6.26488 6.39144 6.54178 6.64433 6.87589 7.57275 7.82018 8.16507 8.24889 8.58399 8.97472 9.67534 11.10762 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.064068 B = 0.019453 C = 0.015984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.932374 B = 1439.052610 C = 1751.339042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.088 3.912 3 Si 0.867 3.133 4 H -0.299 1.299 5 H -0.189 1.189 6 H -0.305 1.305 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.145 3.855 10 H 0.040 0.960 11 C 0.050 3.950 12 O -0.388 6.388 13 C 0.062 3.938 14 C -0.181 4.181 15 C 0.053 3.947 16 N -0.659 5.659 17 H 0.262 0.738 18 H 0.090 0.910 19 H 0.048 0.952 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 -1.691 -2.989 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.116 4.116 3 Si 0.695 3.305 4 H -0.227 1.227 5 H -0.111 1.111 6 H -0.233 1.233 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.038 3.962 10 H 0.058 0.942 11 C -0.027 4.027 12 O -0.307 6.307 13 C -0.017 4.017 14 C -0.221 4.221 15 C -0.078 4.078 16 N -0.289 5.289 17 H 0.072 0.928 18 H 0.108 0.892 19 H 0.067 0.933 20 H 0.087 0.913 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.544 -1.026 -2.639 10.918 hybrid contribution 0.543 0.128 -0.316 0.642 sum 11.087 -0.898 -2.955 11.510 Atomic orbital electron populations 1.69970 1.07031 1.27366 1.49449 1.24961 0.94423 1.00255 0.92006 0.87246 0.84788 0.80908 0.77595 1.22729 1.11098 1.23255 1.20732 0.87551 0.94580 1.53489 0.91275 1.19178 0.97171 0.89678 0.90158 0.94173 1.22473 0.77800 1.00098 1.02318 1.87708 1.22002 1.91754 1.29242 1.22178 0.97925 0.95182 0.86380 1.23432 1.00780 0.96840 1.01003 1.21836 0.88470 0.97005 1.00488 1.62038 1.17496 1.43070 1.06343 0.92841 0.89222 0.93339 0.91321 0.93768 0.92039 0.91772 0.92256 0.92555 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.25 15 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 15 3 Si 0.87 21.90 26.89 -169.99 -4.57 17.33 15 4 H -0.30 -7.73 7.11 56.52 0.40 -7.33 15 5 H -0.19 -4.37 3.67 56.52 0.21 -4.16 15 6 H -0.30 -7.93 7.11 56.52 0.40 -7.53 15 7 C -0.53 -14.64 9.28 -34.44 -0.32 -14.96 15 8 H 0.07 2.07 7.96 -52.49 -0.42 1.65 15 9 C 0.15 3.36 1.55 -71.57 -0.11 3.25 15 10 H 0.04 0.99 6.78 -51.93 -0.35 0.63 15 11 C 0.05 1.01 5.31 33.96 0.18 1.19 15 12 O -0.39 -7.36 10.39 -32.68 -0.34 -7.70 15 13 C 0.06 0.97 6.07 37.99 0.23 1.20 15 14 C -0.18 -2.70 6.32 -25.05 -0.16 -2.86 15 15 C 0.05 0.97 5.01 -4.51 -0.02 0.94 15 16 N -0.66 -13.92 3.52 -111.89 -0.39 -14.31 15 17 H 0.26 7.73 8.31 -40.82 -0.34 7.40 15 18 H 0.09 1.81 8.14 -51.93 -0.42 1.38 15 19 H 0.05 0.95 7.46 -51.93 -0.39 0.57 15 20 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 21 H 0.04 0.68 6.68 -51.93 -0.35 0.33 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.06 1.15 7.11 -51.93 -0.37 0.78 15 25 H 0.06 0.99 7.80 -51.93 -0.40 0.58 15 26 H 0.32 6.42 7.45 -39.29 -0.29 6.12 15 LS Contribution 203.76 15.07 3.07 3.07 Total: -1.00 -30.50 203.76 -5.35 -35.85 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.59 Total: 1.78 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.30 Total: -8.77 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.38 Total: -41.57 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.34 Total: -7.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.57 Total: 17.33 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -30.50 -5.35 -35.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242100.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.248 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds