Wall clock time and date at job start Mon Mar 30 2020 02:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.09003 * 108.89325 * 61.35401 * 9 7 2 11 11 C 1.46267 * 108.91175 * 179.97438 * 9 7 2 12 12 O 1.44513 * 111.31063 * 180.21381 * 11 9 7 13 13 C 1.39906 * 112.81434 * 280.45197 * 12 11 9 14 14 C 1.54579 * 113.22652 * 94.89401 * 13 12 11 15 15 C 1.54617 * 110.90197 * 319.29429 * 14 13 12 16 16 N 1.44012 * 112.48409 * 319.61109 * 15 14 13 17 17 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.11413 * 300.69269 * 11 9 7 19 19 H 1.09005 * 109.10837 * 59.74952 * 11 9 7 20 20 H 1.08999 * 108.73114 * 215.86761 * 13 12 11 21 21 H 1.09002 * 108.72573 * 334.05146 * 13 12 11 22 22 H 1.09002 * 109.18615 * 79.65934 * 14 13 12 23 23 H 1.08996 * 109.18745 * 198.92647 * 14 13 12 24 24 H 1.09001 * 108.88301 * 80.38625 * 15 14 13 25 25 H 1.09004 * 108.87972 * 198.93798 * 15 14 13 26 26 H 1.00906 * 110.99908 * 331.43913 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8648 -0.6997 0.9039 11 6 3.9858 -2.5776 -0.0010 12 8 5.4296 -2.6379 0.0035 13 6 5.9854 -2.4256 -1.2628 14 6 6.3960 -0.9559 -1.5097 15 6 5.3367 0.0159 -0.9402 16 7 3.9903 -0.4369 -1.1768 17 1 -0.4849 0.8401 -0.0004 18 1 3.6045 -3.0854 0.8849 19 1 3.6103 -3.0836 -0.8905 20 1 6.8669 -3.0579 -1.3687 21 1 5.2551 -2.7149 -2.0185 22 1 7.3539 -0.7655 -1.0257 23 1 6.4972 -0.7875 -2.5818 24 1 5.4914 0.1162 0.1341 25 1 5.4663 0.9921 -1.4075 26 1 3.9393 -0.9984 -2.0137 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261242100.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:17 Heat of formation + Delta-G solvation = -55.494286 kcal Electronic energy + Delta-G solvation = -10570.727778 eV Core-core repulsion = 8648.902634 eV Total energy + Delta-G solvation = -1921.825144 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.64261 -36.59522 -34.83944 -33.28289 -29.27487 -27.16121 -25.87582 -22.18352 -21.59271 -19.22593 -17.43722 -16.98514 -16.64944 -16.08867 -15.48790 -14.82434 -14.64536 -14.07076 -13.76234 -13.29830 -12.78543 -12.49447 -12.17380 -11.98047 -11.56770 -11.32180 -11.08176 -10.69686 -10.52653 -8.75379 -8.23808 -6.36994 1.50531 1.57290 1.90744 2.62073 2.95912 3.10996 3.78069 4.01195 4.05407 4.25455 4.28231 4.59263 4.65476 4.81864 4.92064 4.95412 5.09660 5.14875 5.20837 5.60257 6.13525 6.32057 6.40021 6.78028 6.84443 7.43108 8.88817 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.064068 B = 0.019453 C = 0.015984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.932374 B = 1439.052610 C = 1751.339042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.029 3.971 3 Si 0.926 3.074 4 H -0.307 1.307 5 H -0.151 1.151 6 H -0.315 1.315 7 C -0.525 4.525 8 H 0.034 0.966 9 C 0.157 3.843 10 H 0.029 0.971 11 C 0.058 3.942 12 O -0.395 6.395 13 C 0.048 3.952 14 C -0.170 4.170 15 C 0.047 3.953 16 N -0.671 5.671 17 H 0.262 0.738 18 H 0.083 0.917 19 H 0.053 0.947 20 H 0.097 0.903 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.531 -1.332 -3.941 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.235 1.235 5 H -0.072 1.072 6 H -0.244 1.244 7 C -0.563 4.563 8 H 0.052 0.948 9 C 0.049 3.951 10 H 0.047 0.953 11 C -0.019 4.019 12 O -0.314 6.314 13 C -0.029 4.029 14 C -0.209 4.209 15 C -0.083 4.083 16 N -0.302 5.302 17 H 0.070 0.930 18 H 0.101 0.899 19 H 0.071 0.929 20 H 0.115 0.885 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.218 -0.687 -3.603 13.717 hybrid contribution -0.250 -0.074 -0.029 0.262 sum 12.968 -0.761 -3.632 13.489 Atomic orbital electron populations 1.70105 1.08862 1.28063 1.52048 1.25859 0.95033 1.04007 0.92065 0.86422 0.84951 0.76195 0.77244 1.23541 1.07166 1.24390 1.21054 0.90370 0.92983 1.51871 0.94780 1.18907 0.93964 0.91598 0.90626 0.95306 1.22173 0.79174 0.98202 1.02364 1.87704 1.20465 1.91880 1.31314 1.22505 0.98970 0.96475 0.85000 1.23322 1.00055 0.95044 1.02511 1.21908 0.87682 0.98550 1.00195 1.61690 1.19958 1.42872 1.05698 0.92984 0.89852 0.92855 0.88458 0.93375 0.90378 0.89337 0.93546 0.91121 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.46 15 2 C 0.03 1.71 5.47 84.65 0.46 2.17 15 3 Si 0.93 45.18 26.89 68.60 1.84 47.03 15 4 H -0.31 -15.28 7.11 99.48 0.71 -14.58 15 5 H -0.15 -6.42 3.67 99.48 0.37 -6.05 15 6 H -0.32 -15.87 7.11 99.48 0.71 -15.16 15 7 C -0.52 -29.59 9.28 25.60 0.24 -29.35 15 8 H 0.03 2.11 7.96 -2.91 -0.02 2.08 15 9 C 0.16 7.09 1.55 41.92 0.06 7.15 15 10 H 0.03 1.38 6.78 -2.39 -0.02 1.37 15 11 C 0.06 2.28 5.31 69.91 0.37 2.65 15 12 O -0.39 -13.85 10.39 -139.85 -1.45 -15.31 15 13 C 0.05 1.31 6.07 72.52 0.44 1.75 15 14 C -0.17 -4.25 6.32 31.68 0.20 -4.05 15 15 C 0.05 1.53 5.01 87.39 0.44 1.96 15 16 N -0.67 -26.49 3.52 -507.90 -1.79 -28.28 15 17 H 0.26 15.88 8.31 -92.71 -0.77 15.11 15 18 H 0.08 3.34 8.14 -2.39 -0.02 3.32 15 19 H 0.05 2.03 7.46 -2.38 -0.02 2.01 15 20 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.05 1.29 6.68 -2.39 -0.02 1.27 15 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.05 1.64 7.11 -2.39 -0.02 1.62 15 25 H 0.07 2.14 7.80 -2.38 -0.02 2.12 15 26 H 0.33 12.21 7.45 -89.69 -0.67 11.54 15 Total: -1.00 -65.67 203.76 1.27 -64.39 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.15 Total: 10.33 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 2.21 Total: -17.71 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -1.49 Total: -88.74 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.45 Total: -15.31 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.84 Total: 47.03 kcal Total: -65.67 1.27 -64.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242100.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.900 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds