Wall clock time and date at job start Mon Mar 30 2020 02:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47333 * 2 1 4 4 C 1.42900 * 114.00143 * 179.31260 * 3 2 1 5 5 C 1.50693 * 113.25259 * 292.45408 * 4 3 2 6 6 H 1.08008 * 120.00085 * 127.67637 * 5 4 3 7 7 C 1.37882 * 120.00574 * 307.67254 * 5 4 3 8 8 N 1.31508 * 119.99484 * 354.85084 * 7 5 4 9 9 Si 1.86796 * 120.00172 * 174.85261 * 7 5 4 10 10 H 1.48498 * 109.47593 * 59.99724 * 9 7 5 11 11 H 1.48504 * 109.47079 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46865 * 299.99518 * 9 7 5 13 13 C 1.53507 * 114.17369 * 65.40746 * 4 3 2 14 14 N 1.47486 * 87.93301 * 87.62111 * 13 4 3 15 15 C 1.47483 * 87.83278 * 27.01301 * 14 13 4 16 16 H 1.09000 * 109.46676 * 180.02562 * 1 2 3 17 17 H 1.08998 * 109.47125 * 300.00158 * 1 2 3 18 18 H 1.09002 * 109.46858 * 59.99860 * 1 2 3 19 19 H 1.09006 * 109.47378 * 240.00044 * 2 1 3 20 20 H 1.09002 * 109.47553 * 119.99859 * 2 1 3 21 21 H 0.97006 * 119.99887 * 179.97438 * 8 7 5 22 22 H 1.09000 * 113.47380 * 332.86033 * 13 4 3 23 23 H 1.08997 * 113.48067 * 202.38880 * 13 4 3 24 24 H 1.00905 * 110.99752 * 138.70085 * 14 13 4 25 25 H 1.08994 * 113.47838 * 87.75591 * 15 14 13 26 26 H 1.09001 * 113.47007 * 218.22217 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0157 5 6 4.0511 0.9851 1.3042 6 1 4.8498 0.2582 1.2834 7 6 3.5993 1.4783 2.5099 8 7 2.6986 2.4363 2.5324 9 14 4.2665 0.7858 4.1114 10 1 5.7357 0.9938 4.1667 11 1 3.6243 1.4798 5.2564 12 1 3.9691 -0.6674 4.1842 13 6 4.1179 0.9237 -1.2479 14 7 3.9407 2.2598 -1.8468 15 6 3.9597 2.8134 -0.4800 16 1 -0.3633 -1.0277 0.0005 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5139 -0.8900 19 1 1.8934 -0.5138 -0.8900 20 1 1.8934 -0.5138 0.8900 21 1 2.3804 2.7830 3.3806 22 1 3.5494 0.1427 -1.7530 23 1 5.1620 0.6524 -1.0926 24 1 4.7634 2.5375 -2.3608 25 1 4.9616 3.0464 -0.1197 26 1 3.2571 3.6339 -0.3342 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261318704.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:31 Heat of formation + Delta-G solvation = -34.351640 kcal Electronic energy + Delta-G solvation = -10463.890774 eV Core-core repulsion = 8542.982444 eV Total energy + Delta-G solvation = -1920.908330 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.58254 -36.87770 -34.45994 -31.62085 -28.90588 -26.61823 -25.53261 -23.25483 -20.47218 -19.17797 -17.36617 -16.73312 -16.12064 -15.78991 -15.30435 -14.60710 -14.02360 -13.71435 -13.25129 -12.95070 -12.82136 -12.59886 -12.52371 -12.30271 -11.92440 -11.42955 -10.83155 -10.44426 -9.94163 -9.62391 -8.07782 -6.30822 1.41975 1.43248 1.50635 2.41064 3.10817 3.28739 3.63027 4.29519 4.34767 4.44959 4.54028 4.61828 4.73599 4.77353 4.96953 5.15233 5.24252 5.27040 5.36009 5.52277 5.66785 6.09297 6.55720 6.72788 7.12579 7.47739 8.95351 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.039994 B = 0.021375 C = 0.016459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.933245 B = 1309.614923 C = 1700.740330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.067 3.933 3 O -0.373 6.373 4 C 0.212 3.788 5 C -0.570 4.570 6 H 0.060 0.940 7 C 0.039 3.961 8 N -0.885 5.885 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.271 1.271 13 C -0.022 4.022 14 N -0.629 5.629 15 C 0.028 3.972 16 H 0.090 0.910 17 H 0.042 0.958 18 H 0.058 0.942 19 H 0.037 0.963 20 H 0.024 0.976 21 H 0.260 0.740 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.318 0.682 25 H 0.065 0.935 26 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -3.893 -3.147 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.010 4.010 3 O -0.292 6.292 4 C 0.173 3.827 5 C -0.608 4.608 6 H 0.078 0.922 7 C -0.165 4.165 8 N -0.520 5.520 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.196 1.196 13 C -0.153 4.153 14 N -0.254 5.254 15 C -0.103 4.103 16 H 0.108 0.892 17 H 0.061 0.939 18 H 0.077 0.923 19 H 0.055 0.945 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.130 0.870 25 H 0.083 0.917 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.204 -3.534 -3.376 4.892 hybrid contribution 1.417 -0.353 1.292 1.950 sum 1.213 -3.887 -2.084 4.575 Atomic orbital electron populations 1.21662 0.93365 1.02567 1.01696 1.22138 0.95292 0.85344 0.98256 1.87796 1.21735 1.25256 1.94455 1.19975 0.79420 0.92575 0.90767 1.21526 1.20540 1.26856 0.91884 0.92188 1.25721 0.94504 0.94252 1.01994 1.70197 1.29548 1.25663 1.26582 0.85800 0.78873 0.78797 0.79271 1.19295 1.21056 1.19639 1.24257 1.00336 0.93361 0.97332 1.67262 1.40851 1.04905 1.12357 1.23515 0.99099 0.99209 0.88442 0.89154 0.93867 0.92311 0.94505 0.95723 0.93071 0.91008 0.91155 0.86964 0.91702 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 10.28 71.98 0.74 -4.17 15 2 C 0.07 2.95 6.32 71.98 0.45 3.41 15 3 O -0.37 -19.80 9.62 -148.98 -1.43 -21.23 15 4 C 0.21 10.79 0.69 -11.20 -0.01 10.78 15 5 C -0.57 -30.75 7.81 25.60 0.20 -30.55 15 6 H 0.06 3.14 7.82 -2.91 -0.02 3.12 15 7 C 0.04 2.14 5.39 84.66 0.46 2.60 15 8 N -0.88 -51.33 12.79 21.45 0.27 -51.06 15 9 Si 0.95 42.51 29.54 68.60 2.03 44.54 15 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 11 H -0.29 -12.65 7.11 99.48 0.71 -11.95 15 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 13 C -0.02 -0.94 7.78 83.57 0.65 -0.29 15 14 N -0.63 -26.10 8.71 -542.32 -4.73 -30.83 15 15 C 0.03 1.33 8.04 83.57 0.67 2.01 15 16 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 17 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 18 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 19 H 0.04 1.49 6.74 -2.38 -0.02 1.48 15 20 H 0.02 1.17 7.57 -2.39 -0.02 1.15 15 21 H 0.26 14.43 8.31 -92.70 -0.77 13.66 15 22 H 0.07 2.92 6.75 -2.39 -0.02 2.90 15 23 H 0.07 2.77 8.10 -2.39 -0.02 2.75 15 24 H 0.32 10.94 8.91 -89.69 -0.80 10.14 15 25 H 0.06 2.98 8.10 -2.39 -0.02 2.96 15 26 H 0.05 2.63 8.14 -2.39 -0.02 2.61 15 Total: -1.00 -61.50 223.17 -0.33 -61.83 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.36 Total: 12.97 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.17 Total: -16.22 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -4.45 Total: -81.88 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.43 Total: -21.23 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -61.50 -0.33 -61.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261318704.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.480 kcal (2) G-P(sol) polarization free energy of solvation -61.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds