Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99986 * 2 1 4 4 C 1.50696 * 112.93544 * 295.41711 * 3 2 1 5 5 H 1.08001 * 119.99512 * 125.46542 * 4 3 2 6 6 C 1.37872 * 120.00795 * 305.18713 * 4 3 2 7 7 N 1.31509 * 120.00749 * 187.80393 * 6 4 3 8 8 Si 1.86801 * 119.99525 * 7.81061 * 6 4 3 9 9 H 1.48500 * 109.47534 * 89.18805 * 8 6 4 10 10 H 1.48503 * 109.47047 * 209.18966 * 8 6 4 11 11 H 1.48506 * 109.47196 * 329.18731 * 8 6 4 12 12 C 1.53937 * 113.73217 * 66.98870 * 3 2 1 13 13 N 1.48187 * 86.10109 * 90.77853 * 12 3 2 14 14 C 1.46907 * 111.07244 * 137.51760 * 13 12 3 15 15 C 1.47962 * 90.80045 * 24.59686 * 13 12 3 16 16 H 1.09004 * 109.47487 * 295.13726 * 1 2 3 17 17 H 1.09001 * 109.47354 * 55.13521 * 1 2 3 18 18 H 1.08999 * 109.47473 * 175.14091 * 1 2 3 19 19 H 0.97000 * 120.00644 * 180.02562 * 7 6 4 20 20 H 1.09003 * 113.75461 * 205.06010 * 12 3 2 21 21 H 1.08991 * 113.75725 * 336.42493 * 12 3 2 22 22 H 1.09002 * 109.46929 * 320.56669 * 14 13 12 23 23 H 1.08999 * 109.46980 * 80.56231 * 14 13 12 24 24 H 1.08996 * 109.46906 * 200.56843 * 14 13 12 25 25 H 1.08997 * 113.76161 * 221.08500 * 15 13 12 26 26 H 1.09005 * 113.85859 * 89.73274 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7049 2.0843 -1.2535 5 1 1.2531 3.0628 -1.1846 6 6 2.0075 1.5501 -2.4880 7 7 1.8850 2.2861 -3.5710 8 14 2.5913 -0.2192 -2.6223 9 1 1.4187 -1.1170 -2.7785 10 1 3.4819 -0.3584 -3.8024 11 1 3.3375 -0.5890 -1.3927 12 6 1.7589 2.0955 1.2971 13 7 3.0288 1.5059 1.7826 14 6 3.8422 2.5080 2.4842 15 6 3.4987 1.3208 0.3919 16 1 -0.3634 0.4365 0.9303 17 1 -0.3634 0.5874 -0.8432 18 1 -0.3634 -1.0239 -0.0870 19 1 2.0975 1.9101 -4.4395 20 1 1.7983 3.1771 1.1670 21 1 0.8800 1.7641 1.8498 22 1 3.7731 3.4623 1.9620 23 1 3.4753 2.6245 3.5040 24 1 4.8817 2.1808 2.5071 25 1 4.0072 0.3717 0.2227 26 1 4.0485 2.1743 -0.0050 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322512.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = -25.376118 kcal Electronic energy + Delta-G solvation = -10572.090654 eV Core-core repulsion = 8651.571533 eV Total energy + Delta-G solvation = -1920.519122 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.02266 -37.23701 -34.61394 -31.13299 -27.77937 -27.70020 -26.59050 -23.44451 -20.50740 -19.27482 -17.22185 -16.99318 -16.23421 -15.77720 -15.16501 -15.06294 -14.70349 -14.59699 -13.39498 -13.02656 -12.84318 -12.72526 -12.27867 -12.05746 -11.86341 -11.77038 -10.95184 -10.79392 -10.10585 -9.60509 -8.37790 -6.50049 1.41167 1.42565 1.63752 2.39528 2.86030 3.04617 3.32785 4.04313 4.18549 4.26426 4.57257 4.59511 4.66370 4.74384 4.85435 4.91905 4.97456 5.01655 5.20482 5.40186 5.44948 5.96912 6.19400 6.58114 6.73730 7.27580 8.75546 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.050304 B = 0.021174 C = 0.019302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.477147 B = 1322.048815 C = 1450.265345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.390 6.390 3 C 0.176 3.824 4 C -0.539 4.539 5 H 0.044 0.956 6 C 0.040 3.960 7 N -0.932 5.932 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.308 1.308 11 H -0.240 1.240 12 C -0.007 4.007 13 N -0.489 5.489 14 C -0.011 4.011 15 C 0.015 3.985 16 H 0.048 0.952 17 H 0.029 0.971 18 H 0.091 0.909 19 H 0.268 0.732 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.032 0.968 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -2.769 8.634 9.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.310 6.310 3 C 0.136 3.864 4 C -0.577 4.577 5 H 0.062 0.938 6 C -0.161 4.161 7 N -0.571 5.571 8 Si 0.780 3.220 9 H -0.205 1.205 10 H -0.236 1.236 11 H -0.163 1.163 12 C -0.136 4.136 13 N -0.211 5.211 14 C -0.160 4.160 15 C -0.114 4.114 16 H 0.067 0.933 17 H 0.047 0.953 18 H 0.109 0.891 19 H 0.077 0.923 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.050 0.950 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.324 -3.459 8.951 9.687 hybrid contribution -0.013 0.566 -1.090 1.228 sum 1.310 -2.894 7.861 8.479 Atomic orbital electron populations 1.22594 0.81252 1.02040 1.00117 1.87662 1.20372 1.28986 1.93968 1.20853 0.91752 0.81516 0.92240 1.21363 1.42410 1.03199 0.90738 0.93752 1.25652 0.93754 1.01500 0.95170 1.70058 1.49405 1.38341 0.99271 0.85672 0.78770 0.80437 0.77165 1.20537 1.23643 1.16342 1.24460 0.94617 0.98199 0.96308 1.68459 1.03923 1.35859 1.12869 1.22908 0.99064 0.93933 1.00074 1.24236 0.97025 1.01233 0.88917 0.93303 0.95267 0.89091 0.92303 0.91312 0.89364 0.94964 0.89959 0.90606 0.90465 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.61 113.37 1.20 2.61 15 2 O -0.39 -17.91 7.51 -148.98 -1.12 -19.03 15 3 C 0.18 8.20 0.35 -10.89 0.00 8.19 15 4 C -0.54 -29.82 8.10 25.60 0.21 -29.62 15 5 H 0.04 2.69 8.06 -2.91 -0.02 2.66 15 6 C 0.04 2.29 5.47 84.65 0.46 2.75 15 7 N -0.93 -56.87 13.96 21.44 0.30 -56.57 15 8 Si 0.95 46.91 25.71 68.60 1.76 48.67 15 9 H -0.28 -13.59 7.11 99.48 0.71 -12.88 15 10 H -0.31 -15.04 7.11 99.48 0.71 -14.33 15 11 H -0.24 -11.33 5.14 99.48 0.51 -10.82 15 12 C -0.01 -0.28 7.11 86.37 0.61 0.34 15 13 N -0.49 -18.58 6.55 -936.50 -6.14 -24.72 15 14 C -0.01 -0.33 9.65 127.69 1.23 0.91 15 15 C 0.01 0.63 6.48 86.41 0.56 1.19 15 16 H 0.05 1.67 6.95 -2.39 -0.02 1.65 15 17 H 0.03 1.25 7.34 -2.39 -0.02 1.24 15 18 H 0.09 3.00 8.14 -2.39 -0.02 2.98 15 19 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 20 H 0.07 2.72 7.58 -2.39 -0.02 2.70 15 21 H 0.09 3.25 6.92 -2.39 -0.02 3.23 15 22 H 0.03 0.96 7.63 -2.39 -0.02 0.95 15 23 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 25 H 0.08 3.32 6.92 -2.39 -0.02 3.30 15 26 H 0.07 3.17 7.88 -2.38 -0.02 3.15 15 Total: -1.00 -62.73 212.87 0.03 -62.70 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 0.95 Total: 2.58 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.28 Total: -13.63 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -5.84 Total: -81.29 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -1.12 Total: -19.03 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.76 Total: 48.67 kcal Total: -62.73 0.03 -62.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322512.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.323 kcal (2) G-P(sol) polarization free energy of solvation -62.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds