Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47435 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47317 * 300.00203 * 3 2 1 6 6 H 1.48503 * 109.46970 * 60.00117 * 3 2 1 7 7 C 1.37877 * 120.00660 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00576 * 185.56467 * 7 2 1 9 9 C 1.50703 * 119.99396 * 5.56369 * 7 2 1 10 10 C 1.52999 * 110.27539 * 295.65254 * 9 7 2 11 11 O 1.42901 * 109.47320 * 303.37985 * 10 9 7 12 12 C 1.54602 * 110.39346 * 57.80031 * 9 7 2 13 13 C 1.54935 * 102.92090 * 97.00110 * 12 9 7 14 14 N 1.48534 * 103.22748 * 37.41567 * 13 12 9 15 15 C 1.47902 * 105.82231 * 320.79126 * 14 13 12 16 16 H 0.96995 * 120.00393 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.47063 * 183.37361 * 10 9 7 18 18 H 1.09007 * 109.47025 * 63.38070 * 10 9 7 19 19 H 0.96696 * 113.99843 * 179.97438 * 11 10 9 20 20 H 1.08998 * 110.71971 * 215.35593 * 12 9 7 21 21 H 1.08997 * 110.72413 * 338.64181 * 12 9 7 22 22 H 1.08999 * 110.67092 * 278.97845 * 13 12 9 23 23 H 1.08999 * 110.81051 * 155.91830 * 13 12 9 24 24 H 1.00899 * 111.00229 * 81.30529 * 14 13 12 25 25 H 1.09002 * 109.91501 * 265.98296 * 15 14 13 26 26 H 1.08998 * 110.08751 * 144.77592 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0808 -1.1962 0.0902 9 6 1.2564 -2.4960 -0.1277 10 6 0.3478 -2.7059 1.0853 11 8 1.1299 -2.6583 2.2803 12 6 0.4248 -2.5144 -1.4308 13 6 1.3406 -3.2840 -2.4154 14 7 1.9605 -4.3268 -1.5585 15 6 2.2446 -3.6691 -0.2646 16 1 -0.4850 0.8400 0.0004 17 1 -0.1410 -3.6773 1.0093 18 1 -0.4075 -1.9205 1.1137 19 1 0.6176 -2.7838 3.0908 20 1 -0.5145 -3.0469 -1.2813 21 1 0.2422 -1.5003 -1.7862 22 1 2.1023 -2.6230 -2.8289 23 1 0.7546 -3.7400 -3.2134 24 1 1.3381 -5.1115 -1.4363 25 1 3.2684 -3.2952 -0.2550 26 1 2.0994 -4.3744 0.5537 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261323495.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = -73.303550 kcal Electronic energy + Delta-G solvation = -10563.754674 eV Core-core repulsion = 8641.157263 eV Total energy + Delta-G solvation = -1922.597411 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.83085 -36.85716 -34.67586 -31.26948 -29.67587 -26.90416 -25.24072 -22.41864 -20.58265 -18.08327 -17.83921 -17.10240 -16.74288 -15.55064 -14.78170 -14.64174 -14.36723 -13.61263 -13.03587 -12.82470 -12.71678 -12.41112 -12.36203 -11.89181 -11.65528 -11.27204 -10.71235 -10.63024 -10.31729 -9.34984 -8.04826 -6.13027 1.37975 1.41438 1.51613 2.45330 3.21113 3.58311 3.82672 4.29623 4.46041 4.59240 4.66993 4.72947 4.85632 5.06662 5.20877 5.29379 5.38082 5.66528 5.79029 5.83965 6.03981 6.46297 6.68591 6.84799 7.25003 7.51363 8.97741 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.046560 B = 0.020698 C = 0.017625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.224679 B = 1352.432109 C = 1588.242265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.496 4.496 8 H 0.037 0.963 9 C 0.034 3.966 10 C 0.098 3.902 11 O -0.579 6.579 12 C -0.122 4.122 13 C 0.051 3.949 14 N -0.676 5.676 15 C 0.063 3.937 16 H 0.258 0.742 17 H 0.017 0.983 18 H 0.044 0.956 19 H 0.372 0.628 20 H 0.041 0.959 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.337 0.663 25 H 0.045 0.955 26 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -4.854 -0.731 5.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.032 3.968 10 C 0.020 3.980 11 O -0.384 6.384 12 C -0.162 4.162 13 C -0.078 4.078 14 N -0.303 5.303 15 C -0.067 4.067 16 H 0.067 0.933 17 H 0.035 0.965 18 H 0.062 0.938 19 H 0.218 0.782 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.153 0.847 25 H 0.064 0.936 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.041 -4.612 -1.462 4.838 hybrid contribution -1.051 1.192 1.005 1.880 sum -1.010 -3.421 -0.457 3.596 Atomic orbital electron populations 1.69980 1.06459 1.26564 1.51866 1.25466 0.95627 1.01392 0.95145 0.85744 0.79056 0.80824 0.77416 1.20084 1.20475 1.21105 1.21196 0.92306 0.91361 1.48554 0.94506 1.19439 0.92638 0.93796 0.90881 1.22235 0.93927 0.96134 0.85661 1.86531 1.39232 1.96229 1.16382 1.22792 0.96596 1.00209 0.96567 1.22993 0.96027 0.93173 0.95615 1.62777 1.46543 1.09067 1.11960 1.22660 0.98877 0.95034 0.90138 0.93318 0.96476 0.93768 0.78202 0.94026 0.92430 0.92181 0.89369 0.84730 0.93610 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.49 10.13 21.45 0.22 -50.28 15 2 C 0.02 1.21 4.88 84.66 0.41 1.62 15 3 Si 0.94 44.46 29.54 68.60 2.03 46.49 15 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 7 C -0.50 -27.55 7.60 25.60 0.19 -27.36 15 8 H 0.04 2.13 7.37 -2.91 -0.02 2.11 15 9 C 0.03 1.66 0.43 -52.04 -0.02 1.64 15 10 C 0.10 4.59 5.41 71.98 0.39 4.98 15 11 O -0.58 -26.06 12.92 -148.98 -1.92 -27.99 15 12 C -0.12 -5.50 5.67 31.80 0.18 -5.32 15 13 C 0.05 1.96 7.55 86.65 0.65 2.62 15 14 N -0.68 -25.38 7.51 -502.19 -3.77 -29.15 15 15 C 0.06 2.74 6.68 86.45 0.58 3.31 15 16 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 17 H 0.02 0.71 8.14 -2.39 -0.02 0.69 15 18 H 0.04 2.29 6.37 -2.38 -0.02 2.28 15 19 H 0.37 12.58 9.12 -74.06 -0.68 11.91 15 20 H 0.04 1.76 7.86 -2.39 -0.02 1.74 15 21 H 0.06 2.95 6.40 -2.39 -0.02 2.93 15 22 H 0.06 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.34 10.81 8.92 -89.69 -0.80 10.01 15 25 H 0.05 2.18 7.40 -2.39 -0.02 2.16 15 26 H 0.05 2.29 7.57 -2.39 -0.02 2.27 15 Total: -1.00 -60.76 213.38 -1.36 -62.12 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.29 Total: 17.32 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 2.39 Total: -18.51 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -3.55 Total: -79.42 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.92 Total: -27.99 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -60.76 -1.36 -62.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323495.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.188 kcal (2) G-P(sol) polarization free energy of solvation -60.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds