Wall clock time and date at job start Mon Mar 30 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48506 * 109.47276 * 269.99865 * 3 2 1 5 5 H 1.48505 * 109.47013 * 29.99640 * 3 2 1 6 6 H 1.48496 * 109.47486 * 149.99731 * 3 2 1 7 7 C 1.38958 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99997 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00064 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00015 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99833 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00156 * 179.97438 * 10 9 7 13 13 C 1.54036 * 113.81709 * 180.02562 * 12 10 9 14 14 O 1.44179 * 85.66382 * 136.73615 * 13 12 10 15 15 C 1.44442 * 93.22864 * 335.92808 * 14 13 12 16 16 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 17 17 H 0.96996 * 120.00076 * 359.97438 * 9 7 2 18 18 H 1.08992 * 113.00272 * 48.17174 * 12 10 9 19 19 H 1.09002 * 113.86404 * 250.95052 * 13 12 10 20 20 H 1.09002 * 113.86879 * 22.52496 * 13 12 10 21 21 H 1.09008 * 113.74590 * 269.91647 * 15 14 13 22 22 H 1.08995 * 114.06139 * 138.26913 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0021 11 8 3.4472 -3.4210 0.0031 12 6 5.5607 -2.3705 0.0021 13 6 6.1827 -3.7797 0.0027 14 8 7.0965 -3.2577 -0.9828 15 6 6.1827 -2.2193 -1.3990 16 1 -0.4850 0.8400 -0.0004 17 1 3.8648 -0.3633 0.0007 18 1 5.9866 -1.7008 0.7491 19 1 6.6585 -4.0513 0.9451 20 1 5.5185 -4.5552 -0.3788 21 1 5.5192 -2.5179 -2.2106 22 1 6.6564 -1.2525 -1.5692 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306175553.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:12 Heat of formation + Delta-G solvation = -48.383342 kcal Electronic energy + Delta-G solvation = -9796.883567 eV Core-core repulsion = 7739.533683 eV Total energy + Delta-G solvation = -2057.349884 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.26465 -37.67995 -34.06644 -31.76493 -29.75780 -26.27510 -25.02719 -21.39225 -19.27491 -18.37162 -16.62410 -16.03782 -15.48426 -15.02725 -14.19919 -13.52211 -13.12016 -12.48701 -12.36462 -12.18051 -11.32245 -10.95629 -10.84058 -10.61546 -10.03144 -9.65562 -9.50607 -8.55332 -8.26423 -6.38431 -3.90126 2.98051 3.02434 3.11184 3.51930 3.93526 4.04230 4.46372 4.71986 5.16375 5.33171 5.43051 5.65868 5.69774 5.85957 6.17709 6.25987 6.37123 7.48838 8.06656 8.50328 8.86381 9.34549 9.72705 10.74319 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.076225 B = 0.013722 C = 0.012107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.245576 B = 2040.024496 C = 2312.199129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.310 4.310 8 H 0.120 0.880 9 N -0.582 5.582 10 C 0.449 3.551 11 O -0.577 6.577 12 C -0.178 4.178 13 C 0.061 3.939 14 O -0.389 6.389 15 C 0.051 3.949 16 H 0.275 0.725 17 H 0.372 0.628 18 H 0.111 0.889 19 H 0.089 0.911 20 H 0.096 0.904 21 H 0.086 0.914 22 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.621 1.184 -0.489 10.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.439 4.439 8 H 0.138 0.862 9 N -0.219 5.219 10 C 0.235 3.765 11 O -0.460 6.460 12 C -0.200 4.200 13 C -0.016 4.016 14 O -0.308 6.308 15 C -0.026 4.026 16 H 0.085 0.915 17 H 0.205 0.795 18 H 0.129 0.871 19 H 0.107 0.893 20 H 0.114 0.886 21 H 0.104 0.896 22 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.246 0.535 -0.566 10.275 hybrid contribution 0.316 1.563 0.152 1.602 sum 10.562 2.099 -0.414 10.776 Atomic orbital electron populations 1.69617 1.05700 1.27688 1.48634 1.25066 0.95515 0.98087 0.97349 0.86667 0.79830 0.83889 0.79026 1.19457 1.20037 1.19418 1.19481 0.79292 0.96724 1.48371 0.86210 1.42268 1.07588 1.06271 1.65778 1.19605 0.87881 0.84563 0.84434 1.90558 1.69394 1.31070 1.55001 1.24435 0.95842 1.00137 0.99568 1.23815 0.89789 0.95325 0.92659 1.89652 1.35845 1.48807 1.56523 1.23898 0.90567 0.92539 0.95597 0.91471 0.79522 0.87114 0.89285 0.88551 0.89601 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.96 55.50 0.77 -24.56 14 2 C 0.04 1.18 5.50 -17.47 -0.10 1.08 14 3 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 14 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 14 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 14 7 C -0.31 -8.70 10.16 -14.93 -0.15 -8.86 14 8 H 0.12 3.84 7.39 -52.49 -0.39 3.46 14 9 N -0.58 -13.77 5.09 -10.96 -0.06 -13.82 14 10 C 0.45 10.16 7.32 -10.99 -0.08 10.08 14 11 O -0.58 -15.39 15.47 5.54 0.09 -15.31 14 12 C -0.18 -3.01 4.39 -90.69 -0.40 -3.41 14 13 C 0.06 0.98 8.56 37.61 0.32 1.30 14 14 O -0.39 -6.37 12.47 -35.23 -0.44 -6.81 14 15 C 0.05 0.78 8.78 37.61 0.33 1.11 14 16 H 0.27 7.30 8.31 -40.82 -0.34 6.96 14 17 H 0.37 7.70 5.76 -40.82 -0.24 7.47 14 18 H 0.11 1.61 8.14 -51.93 -0.42 1.19 14 19 H 0.09 1.20 8.14 -51.93 -0.42 0.78 14 20 H 0.10 1.66 7.40 -51.93 -0.38 1.28 14 21 H 0.09 1.34 8.09 -51.92 -0.42 0.92 14 22 H 0.09 1.13 8.14 -51.93 -0.42 0.71 14 LS Contribution 201.55 15.07 3.04 3.04 Total: -1.00 -31.61 201.55 -3.25 -34.86 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -1.86 Total: 6.94 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.07 Total: 1.31 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.72 Total: -38.38 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.35 Total: -22.11 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -31.61 -3.25 -34.86 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175553.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.525 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds