Wall clock time and date at job start Mon Mar 30 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48506 * 109.47276 * 269.99865 * 3 2 1 5 5 H 1.48505 * 109.47013 * 29.99640 * 3 2 1 6 6 H 1.48496 * 109.47486 * 149.99731 * 3 2 1 7 7 C 1.38958 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99997 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00064 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00015 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99833 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00156 * 179.97438 * 10 9 7 13 13 C 1.54036 * 113.81709 * 180.02562 * 12 10 9 14 14 O 1.44179 * 85.66382 * 136.73615 * 13 12 10 15 15 C 1.44442 * 93.22864 * 335.92808 * 14 13 12 16 16 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 17 17 H 0.96996 * 120.00076 * 359.97438 * 9 7 2 18 18 H 1.08992 * 113.00272 * 48.17174 * 12 10 9 19 19 H 1.09002 * 113.86404 * 250.95052 * 13 12 10 20 20 H 1.09002 * 113.86879 * 22.52496 * 13 12 10 21 21 H 1.09008 * 113.74590 * 269.91647 * 15 14 13 22 22 H 1.08995 * 114.06139 * 138.26913 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0021 11 8 3.4472 -3.4210 0.0031 12 6 5.5607 -2.3705 0.0021 13 6 6.1827 -3.7797 0.0027 14 8 7.0965 -3.2577 -0.9828 15 6 6.1827 -2.2193 -1.3990 16 1 -0.4850 0.8400 -0.0004 17 1 3.8648 -0.3633 0.0007 18 1 5.9866 -1.7008 0.7491 19 1 6.6585 -4.0513 0.9451 20 1 5.5185 -4.5552 -0.3788 21 1 5.5192 -2.5179 -2.2106 22 1 6.6564 -1.2525 -1.5692 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175553.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:12 Heat of formation + Delta-G solvation = -74.016065 kcal Electronic energy + Delta-G solvation = -9797.995085 eV Core-core repulsion = 7739.533683 eV Total energy + Delta-G solvation = -2058.461403 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.67175 -39.45320 -36.08287 -33.82119 -31.19639 -27.52836 -26.95911 -23.00293 -21.13452 -20.09440 -18.30504 -17.33345 -17.07968 -16.61704 -15.88975 -15.30441 -14.96193 -14.38337 -13.83025 -13.63419 -13.03365 -12.46831 -12.38912 -12.07762 -11.96599 -11.56401 -10.76845 -10.40581 -10.30415 -8.45493 -6.07597 1.29738 1.33813 1.44254 1.79811 2.20880 2.66845 2.83131 3.06838 3.38784 4.00152 4.21609 4.27654 4.43533 4.58937 4.95493 5.02389 5.09580 5.49833 5.89816 6.51763 6.80925 7.32276 7.86647 8.71777 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.076225 B = 0.013722 C = 0.012107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.245576 B = 2040.024496 C = 2312.199129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.964 3.036 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.230 1.230 7 C -0.336 4.336 8 H 0.056 0.944 9 N -0.580 5.580 10 C 0.449 3.551 11 O -0.626 6.626 12 C -0.171 4.171 13 C 0.060 3.940 14 O -0.393 6.393 15 C 0.056 3.944 16 H 0.281 0.719 17 H 0.392 0.608 18 H 0.149 0.851 19 H 0.119 0.881 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.492 3.330 -0.334 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.211 4.211 3 Si 0.784 3.216 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.153 1.153 7 C -0.465 4.465 8 H 0.074 0.926 9 N -0.220 5.220 10 C 0.238 3.762 11 O -0.512 6.512 12 C -0.193 4.193 13 C -0.017 4.017 14 O -0.312 6.312 15 C -0.021 4.021 16 H 0.090 0.910 17 H 0.228 0.772 18 H 0.167 0.833 19 H 0.137 0.863 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.145 2.670 -0.414 13.419 hybrid contribution -0.633 0.755 0.092 0.989 sum 12.512 3.425 -0.322 12.976 Atomic orbital electron populations 1.69795 1.08219 1.29481 1.49482 1.26154 0.96473 1.02815 0.95646 0.85373 0.79542 0.76530 0.80168 1.17841 1.19925 1.15334 1.19060 0.81511 0.95069 1.50897 0.92610 1.42081 1.05873 1.07648 1.66370 1.20780 0.90486 0.83358 0.81613 1.90540 1.71374 1.32942 1.56366 1.24604 0.90573 1.01857 1.02234 1.23861 0.89674 0.94368 0.93805 1.89664 1.35792 1.49161 1.56620 1.24054 0.90184 0.94041 0.93814 0.90954 0.77250 0.83333 0.86265 0.90811 0.90818 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.96 21.66 0.30 -55.00 14 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 14 3 Si 0.96 37.69 27.74 68.60 1.90 39.59 14 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 14 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 14 6 H -0.23 -7.50 6.52 99.48 0.65 -6.86 14 7 C -0.34 -19.50 10.16 84.04 0.85 -18.64 14 8 H 0.06 3.86 7.39 -2.91 -0.02 3.84 14 9 N -0.58 -26.94 5.09 -306.98 -1.56 -28.50 14 10 C 0.45 20.10 7.32 87.66 0.64 20.74 14 11 O -0.63 -34.53 15.47 -3.09 -0.05 -34.58 14 12 C -0.17 -5.24 4.39 -10.84 -0.05 -5.29 14 13 C 0.06 1.77 8.56 72.27 0.62 2.39 14 14 O -0.39 -11.54 12.47 -148.98 -1.86 -13.40 14 15 C 0.06 1.49 8.78 72.28 0.63 2.13 14 16 H 0.28 15.21 8.31 -92.71 -0.77 14.44 14 17 H 0.39 14.88 5.76 -92.71 -0.53 14.35 14 18 H 0.15 3.50 8.14 -2.39 -0.02 3.48 14 19 H 0.12 2.81 8.14 -2.39 -0.02 2.79 14 20 H 0.07 2.53 7.40 -2.39 -0.02 2.51 14 21 H 0.07 2.15 8.09 -2.38 -0.02 2.13 14 22 H 0.13 2.52 8.14 -2.39 -0.02 2.50 14 Total: -1.00 -72.71 201.55 2.55 -70.17 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.64 Total: 20.56 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 3.17 Total: 1.16 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.26 Total: -83.50 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.91 Total: -47.98 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 1.90 Total: 39.59 kcal Total: -72.71 2.55 -70.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175553.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.850 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds