Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.00292 * 2 1 4 4 C 1.54329 * 109.88272 * 121.09810 * 2 1 3 5 5 H 1.09002 * 110.72032 * 215.58441 * 4 2 1 6 6 N 1.46901 * 110.86959 * 338.78853 * 4 2 1 7 7 C 1.55162 * 102.94140 * 97.22106 * 4 2 1 8 8 C 1.54904 * 101.58121 * 35.50310 * 7 4 2 9 9 N 1.47024 * 109.88108 * 238.90148 * 2 1 3 10 10 C 1.36933 * 125.64348 * 59.56242 * 9 2 1 11 11 H 1.08005 * 120.00334 * 359.97438 * 10 9 2 12 12 C 1.38812 * 120.00121 * 179.97438 * 10 9 2 13 13 N 1.31622 * 119.99864 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00453 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47156 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47417 * 119.99517 * 14 12 10 17 17 H 1.48501 * 109.46988 * 239.99573 * 14 12 10 18 18 H 1.09001 * 109.46858 * 298.90106 * 1 2 3 19 19 H 1.08999 * 109.47027 * 58.90393 * 1 2 3 20 20 H 1.09000 * 109.47467 * 178.90865 * 1 2 3 21 21 H 1.00902 * 110.99315 * 177.45429 * 6 4 2 22 22 H 1.00900 * 111.00102 * 301.40374 * 6 4 2 23 23 H 1.09000 * 110.99946 * 153.57687 * 7 4 2 24 24 H 1.08995 * 111.00204 * 277.38470 * 7 4 2 25 25 H 1.08998 * 110.36955 * 81.82737 * 8 7 4 26 26 H 1.09000 * 110.36921 * 204.03941 * 8 7 4 27 27 H 0.97003 * 120.00290 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 2.9658 -0.2833 1.6182 6 7 1.0295 -0.8033 2.2933 7 6 2.3518 -2.1696 0.6923 8 6 2.8567 -1.8499 -0.7368 9 7 2.0300 -0.7141 -1.1839 10 6 1.7712 -0.3792 -2.4862 11 1 1.1507 0.4757 -2.7109 12 6 2.3065 -1.1385 -3.5176 13 7 3.0631 -2.1801 -3.2439 14 14 1.9541 -0.6812 -5.2942 15 1 1.0843 0.5218 -5.3326 16 1 3.2316 -0.3914 -5.9935 17 1 1.2657 -1.8109 -5.9689 18 1 -0.3633 0.4967 0.8997 19 1 -0.3633 0.5308 -0.8800 20 1 -0.3634 -1.0275 -0.0196 21 1 1.3559 -1.3287 3.0905 22 1 0.7414 0.1247 2.5652 23 1 3.1270 -2.6619 1.2795 24 1 1.4453 -2.7739 0.6610 25 1 3.9091 -1.5668 -0.7129 26 1 2.7105 -2.7087 -1.3918 27 1 3.4375 -2.7105 -3.9646 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306291501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = 25.414855 kcal Electronic energy + Delta-G solvation = -10322.324680 eV Core-core repulsion = 8501.726682 eV Total energy + Delta-G solvation = -1820.597998 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.93370 -33.53177 -31.14028 -30.09468 -27.74117 -24.03078 -23.97530 -20.16655 -18.59558 -16.78574 -15.52856 -14.78530 -14.65895 -13.84726 -12.86763 -12.57584 -12.27741 -11.53859 -11.37455 -11.10535 -10.81204 -10.65593 -10.12670 -9.98592 -9.79217 -9.67788 -9.43494 -8.58742 -8.25311 -6.76496 -5.57935 -2.98877 3.43974 3.49180 3.51856 4.53703 4.96621 5.43569 5.49272 5.62018 5.87298 5.96107 6.34083 6.41992 6.55175 6.64655 6.67614 6.81279 7.01907 7.28228 7.59321 7.64402 7.72261 7.79712 7.94679 8.44059 9.29928 9.91376 10.57021 11.46172 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.079081 B = 0.015391 C = 0.013473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.983082 B = 1818.801490 C = 2077.744659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.161 3.839 3 H 0.024 0.976 4 C 0.076 3.924 5 H 0.033 0.967 6 N -0.836 5.836 7 C -0.136 4.136 8 C 0.152 3.848 9 N -0.597 5.597 10 C -0.214 4.214 11 H 0.077 0.923 12 C -0.015 4.015 13 N -0.924 5.924 14 Si 0.913 3.087 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.291 1.291 18 H 0.039 0.961 19 H 0.039 0.961 20 H 0.053 0.947 21 H 0.332 0.668 22 H 0.334 0.666 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.009 0.991 26 H 0.107 0.893 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 2.060 7.741 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.054 3.946 3 H 0.041 0.959 4 C -0.035 4.035 5 H 0.051 0.949 6 N -0.365 5.365 7 C -0.175 4.175 8 C 0.027 3.973 9 N -0.323 5.323 10 C -0.342 4.342 11 H 0.095 0.905 12 C -0.210 4.210 13 N -0.573 5.573 14 Si 0.744 3.256 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.218 1.218 18 H 0.058 0.942 19 H 0.058 0.942 20 H 0.072 0.928 21 H 0.143 0.857 22 H 0.146 0.854 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.027 0.973 26 H 0.124 0.876 27 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.358 1.620 6.968 7.532 hybrid contribution 0.637 0.786 -0.290 1.052 sum -1.722 2.406 6.678 7.304 Atomic orbital electron populations 1.21915 0.97297 1.01420 0.98603 1.20851 0.93325 0.93719 0.86747 0.95858 1.22394 0.91312 0.97998 0.91794 0.94909 1.58848 1.43103 1.20655 1.13886 1.23061 1.00335 0.94749 0.99338 1.21901 0.91877 0.93604 0.89940 1.44517 1.57031 1.30456 1.00249 1.19104 1.25039 1.09316 0.80754 0.90507 1.24784 1.00150 0.98093 0.97995 1.69818 1.38089 1.19581 1.29836 0.86006 0.77328 0.77456 0.84795 1.20590 1.21869 1.21807 0.94208 0.94221 0.92753 0.85657 0.85397 0.93077 0.91313 0.97278 0.87574 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.46 37.16 0.31 -2.38 15 2 C 0.16 3.54 3.71 -66.95 -0.25 3.29 15 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 4 C 0.08 1.43 3.95 -65.87 -0.26 1.17 15 5 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 6 N -0.84 -12.56 8.01 -3.11 -0.02 -12.59 15 7 C -0.14 -2.76 6.77 -24.58 -0.17 -2.93 15 8 C 0.15 3.86 5.89 -2.53 -0.01 3.85 15 9 N -0.60 -15.86 3.14 -162.57 -0.51 -16.37 15 10 C -0.21 -6.11 9.82 -15.06 -0.15 -6.26 15 11 H 0.08 2.14 7.74 -52.48 -0.41 1.73 15 12 C -0.02 -0.44 5.49 -17.43 -0.10 -0.54 15 13 N -0.92 -27.62 10.09 55.49 0.56 -27.06 15 14 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 18 H 0.04 0.68 6.87 -51.93 -0.36 0.32 15 19 H 0.04 0.83 7.93 -51.93 -0.41 0.42 15 20 H 0.05 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.33 4.23 9.08 -39.29 -0.36 3.87 15 22 H 0.33 4.42 8.16 -39.29 -0.32 4.09 15 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 15 26 H 0.11 3.01 5.88 -51.93 -0.31 2.71 15 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 219.02 15.07 3.30 3.30 Total: -1.00 -30.40 219.02 -6.15 -36.54 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.83 Total: 2.39 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.62 Total: -3.80 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.02 Total: -56.01 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.40 -6.15 -36.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306291501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.957 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds