Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.00292 * 2 1 4 4 C 1.54329 * 109.88272 * 121.09810 * 2 1 3 5 5 H 1.09002 * 110.72032 * 215.58441 * 4 2 1 6 6 N 1.46901 * 110.86959 * 338.78853 * 4 2 1 7 7 C 1.55162 * 102.94140 * 97.22106 * 4 2 1 8 8 C 1.54904 * 101.58121 * 35.50310 * 7 4 2 9 9 N 1.47024 * 109.88108 * 238.90148 * 2 1 3 10 10 C 1.36933 * 125.64348 * 59.56242 * 9 2 1 11 11 H 1.08005 * 120.00334 * 359.97438 * 10 9 2 12 12 C 1.38812 * 120.00121 * 179.97438 * 10 9 2 13 13 N 1.31622 * 119.99864 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00453 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47156 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47417 * 119.99517 * 14 12 10 17 17 H 1.48501 * 109.46988 * 239.99573 * 14 12 10 18 18 H 1.09001 * 109.46858 * 298.90106 * 1 2 3 19 19 H 1.08999 * 109.47027 * 58.90393 * 1 2 3 20 20 H 1.09000 * 109.47467 * 178.90865 * 1 2 3 21 21 H 1.00902 * 110.99315 * 177.45429 * 6 4 2 22 22 H 1.00900 * 111.00102 * 301.40374 * 6 4 2 23 23 H 1.09000 * 110.99946 * 153.57687 * 7 4 2 24 24 H 1.08995 * 111.00204 * 277.38470 * 7 4 2 25 25 H 1.08998 * 110.36955 * 81.82737 * 8 7 4 26 26 H 1.09000 * 110.36921 * 204.03941 * 8 7 4 27 27 H 0.97003 * 120.00290 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 2.9658 -0.2833 1.6182 6 7 1.0295 -0.8033 2.2933 7 6 2.3518 -2.1696 0.6923 8 6 2.8567 -1.8499 -0.7368 9 7 2.0300 -0.7141 -1.1839 10 6 1.7712 -0.3792 -2.4862 11 1 1.1507 0.4757 -2.7109 12 6 2.3065 -1.1385 -3.5176 13 7 3.0631 -2.1801 -3.2439 14 14 1.9541 -0.6812 -5.2942 15 1 1.0843 0.5218 -5.3326 16 1 3.2316 -0.3914 -5.9935 17 1 1.2657 -1.8109 -5.9689 18 1 -0.3633 0.4967 0.8997 19 1 -0.3633 0.5308 -0.8800 20 1 -0.3634 -1.0275 -0.0196 21 1 1.3559 -1.3287 3.0905 22 1 0.7414 0.1247 2.5652 23 1 3.1270 -2.6619 1.2795 24 1 1.4453 -2.7739 0.6610 25 1 3.9091 -1.5668 -0.7129 26 1 2.7105 -2.7087 -1.3918 27 1 3.4375 -2.7105 -3.9646 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306291501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = 3.508884 kcal Electronic energy + Delta-G solvation = -10323.274594 eV Core-core repulsion = 8501.726682 eV Total energy + Delta-G solvation = -1821.547912 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.66924 -35.36185 -32.98833 -31.84842 -29.57984 -26.00184 -25.69498 -22.07375 -20.26724 -18.83108 -17.10308 -16.71330 -16.16321 -15.70460 -14.62082 -14.38210 -14.05982 -13.36162 -13.12967 -12.99099 -12.75977 -12.45045 -11.95849 -11.84314 -11.71387 -11.46381 -11.26930 -10.73809 -9.51663 -8.86629 -7.74994 -5.18630 1.46290 1.47631 1.57871 2.50495 3.33979 3.56710 3.80474 3.90324 4.20067 4.32795 4.63809 4.72387 4.91820 4.95848 5.04541 5.18789 5.35548 5.51333 5.61496 5.69885 5.83409 6.31209 6.37365 6.75554 7.13543 7.82045 8.46413 9.27464 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.079081 B = 0.015391 C = 0.013473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.983082 B = 1818.801490 C = 2077.744659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.147 3.853 3 H 0.022 0.978 4 C 0.093 3.907 5 H 0.044 0.956 6 N -0.832 5.832 7 C -0.121 4.121 8 C 0.152 3.848 9 N -0.619 5.619 10 C -0.227 4.227 11 H 0.079 0.921 12 C -0.073 4.073 13 N -0.952 5.952 14 Si 0.980 3.020 15 H -0.267 1.267 16 H -0.292 1.292 17 H -0.291 1.291 18 H 0.075 0.925 19 H 0.024 0.976 20 H 0.036 0.964 21 H 0.350 0.650 22 H 0.349 0.651 23 H 0.079 0.921 24 H 0.062 0.938 25 H -0.014 1.014 26 H 0.071 0.929 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 2.781 8.930 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.041 3.959 3 H 0.040 0.960 4 C -0.019 4.019 5 H 0.062 0.938 6 N -0.364 5.364 7 C -0.160 4.160 8 C 0.026 3.974 9 N -0.344 5.344 10 C -0.357 4.357 11 H 0.096 0.904 12 C -0.265 4.265 13 N -0.602 5.602 14 Si 0.808 3.192 15 H -0.192 1.192 16 H -0.219 1.219 17 H -0.218 1.218 18 H 0.094 0.906 19 H 0.043 0.957 20 H 0.055 0.945 21 H 0.164 0.836 22 H 0.163 0.837 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.004 0.996 26 H 0.089 0.911 27 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.107 2.362 8.203 9.084 hybrid contribution 0.861 0.585 -0.613 1.208 sum -2.247 2.947 7.590 8.446 Atomic orbital electron populations 1.21759 0.95875 1.00474 0.99709 1.21146 0.94398 0.93642 0.86754 0.96010 1.22114 0.92474 0.95850 0.91482 0.93806 1.58676 1.41717 1.22052 1.13994 1.22866 1.00637 0.96147 0.96382 1.21697 0.90884 0.92201 0.92576 1.44819 1.57307 1.31334 1.00968 1.19433 1.24721 1.09262 0.82252 0.90358 1.25643 1.00474 0.98342 1.02059 1.70072 1.39066 1.20504 1.30570 0.84977 0.77063 0.77429 0.79695 1.19181 1.21928 1.21838 0.90589 0.95701 0.94474 0.83571 0.83705 0.90274 0.91916 0.99622 0.91063 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 8.46 71.98 0.61 -3.99 15 2 C 0.15 6.26 3.71 45.34 0.17 6.42 15 3 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 4 C 0.09 3.21 3.95 46.11 0.18 3.39 15 5 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 6 N -0.83 -21.78 8.01 -163.75 -1.31 -23.09 15 7 C -0.12 -4.75 6.77 31.99 0.22 -4.53 15 8 C 0.15 7.84 5.89 86.85 0.51 8.35 15 9 N -0.62 -33.04 3.14 -668.26 -2.10 -35.14 15 10 C -0.23 -13.15 9.82 84.03 0.83 -12.33 15 11 H 0.08 4.37 7.74 -2.91 -0.02 4.35 15 12 C -0.07 -4.28 5.49 84.86 0.47 -3.82 15 13 N -0.95 -58.38 10.09 21.65 0.22 -58.16 15 14 Si 0.98 46.95 29.55 68.60 2.03 48.98 15 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 16 H -0.29 -13.93 7.11 99.48 0.71 -13.23 15 17 H -0.29 -13.88 7.11 99.48 0.71 -13.17 15 18 H 0.08 2.34 6.87 -2.39 -0.02 2.33 15 19 H 0.02 1.00 7.93 -2.39 -0.02 0.98 15 20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.35 7.40 9.08 -89.69 -0.81 6.59 15 22 H 0.35 7.68 8.16 -89.69 -0.73 6.95 15 23 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 15 26 H 0.07 4.18 5.88 -2.39 -0.01 4.17 15 27 H 0.25 14.57 8.31 -92.71 -0.77 13.80 15 Total: -1.00 -65.74 219.02 1.43 -64.32 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -0.38 Total: 9.59 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 2.98 Total: -6.50 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -3.19 Total: -116.39 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -65.74 1.43 -64.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306291501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.824 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds