Wall clock time and date at job start Mon Mar 30 2020 01:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.87572 * 2 1 4 4 C 1.54321 * 110.01663 * 121.10336 * 2 1 3 5 5 H 1.09008 * 110.71784 * 23.31624 * 4 2 1 6 6 N 1.46906 * 110.71886 * 260.04970 * 4 2 1 7 7 C 1.55153 * 102.94671 * 141.68053 * 4 2 1 8 8 C 1.55131 * 101.48647 * 324.33222 * 7 4 2 9 9 N 1.47026 * 109.88281 * 238.98733 * 2 1 3 10 10 C 1.36945 * 125.64697 * 61.44891 * 9 2 1 11 11 H 1.07997 * 119.99756 * 0.02562 * 10 9 2 12 12 C 1.38805 * 119.99878 * 179.97438 * 10 9 2 13 13 N 1.31624 * 120.00257 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99929 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47187 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 300.00154 * 14 12 10 17 17 H 1.48498 * 109.47018 * 60.00200 * 14 12 10 18 18 H 1.09004 * 109.47101 * 179.55728 * 1 2 3 19 19 H 1.08995 * 109.47186 * 299.55764 * 1 2 3 20 20 H 1.08997 * 109.47460 * 59.55786 * 1 2 3 21 21 H 1.00899 * 110.99709 * 179.97438 * 6 4 2 22 22 H 1.00896 * 110.99592 * 303.95019 * 6 4 2 23 23 H 1.08999 * 111.00098 * 82.57596 * 7 4 2 24 24 H 1.08999 * 111.00620 * 206.38773 * 7 4 2 25 25 H 1.08994 * 110.50226 * 278.45550 * 8 7 4 26 26 H 1.09001 * 110.34274 * 156.05220 * 8 7 4 27 27 H 0.97001 * 119.99885 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0582 -0.7490 1.2415 5 1 1.3104 -1.4473 1.6177 6 7 2.4592 0.1995 2.2892 7 6 3.2918 -1.5108 0.6892 8 6 2.8130 -1.8794 -0.7396 9 7 2.0300 -0.7124 -1.1850 10 6 1.8012 -0.3545 -2.4869 11 1 1.2079 0.5198 -2.7103 12 6 2.3329 -1.1148 -3.5193 13 7 3.0564 -2.1801 -3.2470 14 14 2.0203 -0.6271 -5.2952 15 1 2.6924 -1.5941 -6.1998 16 1 0.5592 -0.6335 -5.5605 17 1 2.5613 0.7345 -5.5371 18 1 -0.3633 -1.0277 -0.0079 19 1 -0.3633 0.5069 0.8939 20 1 -0.3634 0.5207 -0.8859 21 1 2.8049 -0.2860 3.1033 22 1 3.1428 0.8549 1.9411 23 1 4.1682 -0.8634 0.6564 24 1 3.4926 -2.4071 1.2760 25 1 2.1852 -2.7700 -0.7139 26 1 3.6681 -2.0357 -1.3973 27 1 3.4276 -2.7117 -3.9686 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306291502.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:49 Heat of formation + Delta-G solvation = -1.751364 kcal Electronic energy + Delta-G solvation = -10284.784093 eV Core-core repulsion = 8463.008079 eV Total energy + Delta-G solvation = -1821.776013 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.65876 -35.33244 -33.08716 -31.84853 -29.75949 -25.98325 -25.29341 -22.00958 -20.96479 -18.71310 -17.39394 -16.53951 -15.91303 -15.32809 -14.79469 -14.27536 -13.96431 -13.67173 -13.08961 -12.89716 -12.73785 -12.55740 -12.28788 -12.03661 -11.80435 -11.53770 -11.30816 -10.73536 -9.51110 -8.87535 -7.74863 -5.19741 1.45871 1.49177 1.55478 2.49935 3.33135 3.54100 3.78186 4.00872 4.13776 4.31426 4.55944 4.70879 4.80210 4.86085 5.04204 5.11733 5.31070 5.48436 5.52976 5.62569 5.81022 6.24185 6.34040 6.69087 7.12582 7.81452 8.45238 9.25935 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.072667 B = 0.015381 C = 0.013551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.227625 B = 1819.962519 C = 2065.832442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.152 3.848 3 H 0.031 0.969 4 C 0.098 3.902 5 H 0.088 0.912 6 N -0.832 5.832 7 C -0.165 4.165 8 C 0.153 3.847 9 N -0.620 5.620 10 C -0.230 4.230 11 H 0.078 0.922 12 C -0.072 4.072 13 N -0.951 5.951 14 Si 0.979 3.021 15 H -0.293 1.293 16 H -0.279 1.279 17 H -0.277 1.277 18 H 0.037 0.963 19 H 0.071 0.929 20 H 0.035 0.965 21 H 0.352 0.648 22 H 0.343 0.657 23 H 0.061 0.939 24 H 0.080 0.920 25 H -0.015 1.015 26 H 0.071 0.929 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 2.760 8.003 8.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.045 3.955 3 H 0.049 0.951 4 C -0.015 4.015 5 H 0.106 0.894 6 N -0.362 5.362 7 C -0.206 4.206 8 C 0.027 3.973 9 N -0.345 5.345 10 C -0.360 4.360 11 H 0.096 0.904 12 C -0.264 4.264 13 N -0.602 5.602 14 Si 0.808 3.192 15 H -0.219 1.219 16 H -0.206 1.206 17 H -0.203 1.203 18 H 0.056 0.944 19 H 0.090 0.910 20 H 0.054 0.946 21 H 0.166 0.834 22 H 0.156 0.844 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.003 0.997 26 H 0.089 0.911 27 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.415 2.941 7.822 8.476 hybrid contribution 0.809 -0.511 -1.354 1.658 sum -0.606 2.431 6.469 6.937 Atomic orbital electron populations 1.22046 0.96926 1.00415 1.00635 1.21075 0.93413 0.94551 0.86432 0.95135 1.22291 0.95755 0.92820 0.90589 0.89399 1.58760 1.49072 1.19953 1.08426 1.23674 0.98319 1.00908 0.97681 1.21713 0.95411 0.87641 0.92495 1.44860 1.59899 1.28756 1.00969 1.19366 1.26172 1.08101 0.82316 0.90381 1.25630 1.00870 0.97834 1.02028 1.70053 1.40292 1.19109 1.30702 0.85131 0.77577 0.77133 0.79393 1.21937 1.20560 1.20301 0.94356 0.91029 0.94593 0.83365 0.84381 0.92029 0.90118 0.99675 0.91085 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.15 71.98 0.66 -4.81 15 2 C 0.15 6.40 3.46 45.34 0.16 6.55 15 3 H 0.03 1.32 7.92 -2.39 -0.02 1.31 15 4 C 0.10 3.36 3.63 46.10 0.17 3.53 15 5 H 0.09 2.95 7.86 -2.38 -0.02 2.93 15 6 N -0.83 -22.37 9.33 -163.76 -1.53 -23.90 15 7 C -0.17 -6.16 6.76 32.06 0.22 -5.95 15 8 C 0.15 7.73 5.91 86.93 0.51 8.25 15 9 N -0.62 -32.48 3.13 -667.83 -2.09 -34.56 15 10 C -0.23 -13.16 9.87 84.03 0.83 -12.33 15 11 H 0.08 4.30 7.83 -2.91 -0.02 4.28 15 12 C -0.07 -4.14 5.49 84.86 0.47 -3.68 15 13 N -0.95 -57.73 10.08 21.65 0.22 -57.51 15 14 Si 0.98 46.49 29.55 68.60 2.03 48.52 15 15 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 18 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 19 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 20 H 0.03 1.45 8.02 -2.39 -0.02 1.43 15 21 H 0.35 7.53 9.08 -89.69 -0.81 6.72 15 22 H 0.34 9.02 8.85 -89.70 -0.79 8.22 15 23 H 0.06 2.25 8.11 -2.39 -0.02 2.23 15 24 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 25 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 26 H 0.07 4.09 5.85 -2.39 -0.01 4.08 15 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 15 Total: -1.00 -63.91 222.06 1.19 -62.72 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -0.45 Total: 13.17 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 3.01 Total: -8.43 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.40 Total: -115.98 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -63.91 1.19 -62.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306291502.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.972 kcal (2) G-P(sol) polarization free energy of solvation -63.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds