Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99605 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99915 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00011 * 3 2 1 7 7 C 1.38809 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00298 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.01763 * 325.70384 * 10 9 7 12 12 C 1.53883 * 110.03115 * 87.08905 * 10 9 7 13 13 C 1.54271 * 106.59285 * 119.28549 * 12 10 9 14 14 C 1.54882 * 104.19932 * 23.61342 * 13 12 10 15 15 C 1.54259 * 110.03558 * 204.30800 * 10 9 7 16 16 H 1.08997 * 110.48439 * 335.78703 * 15 10 9 17 17 O 1.42908 * 110.48529 * 98.42597 * 15 10 9 18 18 H 0.97000 * 119.99327 * 180.02562 * 1 2 3 19 19 H 0.96992 * 119.99688 * 359.97438 * 9 7 2 20 20 H 1.08995 * 110.02963 * 238.56922 * 12 10 9 21 21 H 1.08998 * 110.03252 * 359.95820 * 12 10 9 22 22 H 1.09007 * 110.47767 * 142.29073 * 13 12 10 23 23 H 1.09001 * 110.48690 * 264.92822 * 13 12 10 24 24 H 1.09005 * 110.75783 * 80.36874 * 14 13 12 25 25 H 1.08994 * 110.75657 * 203.74242 * 14 13 12 26 26 H 0.96700 * 113.99818 * 180.02562 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9776 -3.5568 -0.5766 12 6 2.3854 -4.0765 1.4444 13 6 1.6926 -5.4353 1.6759 14 6 1.5257 -6.0239 0.2530 15 6 1.1787 -4.7748 -0.5960 16 1 0.1227 -4.5252 -0.4932 17 8 1.5109 -4.9937 -1.9686 18 1 -0.4849 -0.8401 0.0004 19 1 0.3558 -2.3881 0.0005 20 1 3.4633 -4.1811 1.5676 21 1 1.9998 -3.3359 2.1450 22 1 2.3207 -6.0845 2.2860 23 1 0.7198 -5.2923 2.1462 24 1 2.4563 -6.4766 -0.0894 25 1 0.7108 -6.7472 0.2273 26 1 0.9876 -5.6867 -2.3942 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306753560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = -50.254481 kcal Electronic energy + Delta-G solvation = -10137.834023 eV Core-core repulsion = 8216.236095 eV Total energy + Delta-G solvation = -1921.597929 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.38134 -35.00819 -33.68848 -30.41105 -27.22120 -26.13658 -23.09275 -20.53150 -19.38273 -17.60490 -16.71113 -15.53666 -14.36471 -14.04375 -13.60250 -13.15581 -13.10544 -12.12025 -11.79233 -11.36089 -10.71568 -10.69217 -10.56419 -10.25347 -9.92827 -9.88409 -9.59120 -9.09363 -8.85977 -6.98398 -6.05590 -3.04560 3.55155 3.59434 3.76504 4.56323 4.73325 5.01301 5.03021 5.37458 5.66777 5.70486 5.79186 5.86178 5.98298 6.11118 6.16781 6.37068 6.49333 6.58639 6.81058 7.02599 7.87170 8.04417 8.80021 9.27689 10.13918 10.28887 11.42940 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070467 B = 0.012612 C = 0.011879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.253766 B = 2219.640335 C = 2356.582413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.047 4.047 3 Si 1.081 2.919 4 H -0.295 1.295 5 H -0.285 1.285 6 H -0.295 1.295 7 C -0.327 4.327 8 H 0.064 0.936 9 N -0.732 5.732 10 C 0.185 3.815 11 H 0.061 0.939 12 C -0.143 4.143 13 C -0.120 4.120 14 C -0.155 4.155 15 C 0.090 3.910 16 H 0.058 0.942 17 O -0.559 6.559 18 H 0.254 0.746 19 H 0.365 0.635 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -10.642 1.029 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.245 4.245 3 Si 0.912 3.088 4 H -0.223 1.223 5 H -0.211 1.211 6 H -0.223 1.223 7 C -0.458 4.458 8 H 0.082 0.918 9 N -0.374 5.374 10 C 0.074 3.926 11 H 0.079 0.921 12 C -0.183 4.183 13 C -0.158 4.158 14 C -0.193 4.193 15 C 0.030 3.970 16 H 0.076 0.924 17 O -0.363 6.363 18 H 0.065 0.935 19 H 0.199 0.801 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.999 -8.442 1.143 9.031 hybrid contribution -0.502 -2.227 -0.049 2.283 sum 2.497 -10.669 1.094 11.011 Atomic orbital electron populations 1.70882 1.06025 1.28302 1.53922 1.25785 0.97080 1.00995 1.00596 0.83229 0.74184 0.75556 0.75851 1.22276 1.21054 1.22288 1.20063 0.92035 0.85744 1.47979 0.91751 1.42474 1.04606 1.00695 1.89630 1.20681 0.94637 0.84816 0.92416 0.92144 1.22906 0.99349 0.95989 1.00092 1.22236 1.00583 0.97222 0.95738 1.23146 1.01479 0.97775 0.96914 1.23131 0.98515 0.94841 0.80489 0.92385 1.86610 1.64647 1.60275 1.24738 0.93512 0.80107 0.92764 0.90729 0.92292 0.91963 0.90925 0.92119 0.78833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.05 13.70 55.49 0.76 -29.29 15 2 C -0.05 -1.42 5.50 -17.43 -0.10 -1.52 15 3 Si 1.08 26.69 29.92 -169.99 -5.09 21.60 15 4 H -0.30 -7.00 7.11 56.52 0.40 -6.60 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.30 -6.93 7.11 56.52 0.40 -6.53 15 7 C -0.33 -9.61 9.96 -15.06 -0.15 -9.76 15 8 H 0.06 1.87 7.83 -52.48 -0.41 1.46 15 9 N -0.73 -19.39 5.03 -52.34 -0.26 -19.65 15 10 C 0.18 4.04 3.31 -66.81 -0.22 3.82 15 11 H 0.06 1.43 8.01 -51.93 -0.42 1.02 15 12 C -0.14 -2.69 6.59 -25.61 -0.17 -2.86 15 13 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 15 14 C -0.15 -2.23 6.62 -24.70 -0.16 -2.39 15 15 C 0.09 1.63 3.93 -25.03 -0.10 1.53 15 16 H 0.06 1.07 7.73 -51.93 -0.40 0.67 15 17 O -0.56 -9.97 13.37 -35.23 -0.47 -10.45 15 18 H 0.25 7.95 6.77 -40.82 -0.28 7.67 15 19 H 0.37 9.89 6.38 -40.82 -0.26 9.63 15 20 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 21 H 0.07 1.57 7.92 -51.93 -0.41 1.16 15 22 H 0.06 0.77 8.14 -51.92 -0.42 0.35 15 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 26 H 0.37 4.49 9.12 45.56 0.42 4.91 15 LS Contribution 220.56 15.07 3.32 3.32 Total: -1.00 -33.19 220.56 -5.48 -38.67 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.67 Total: 8.96 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.07 Total: -13.16 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.50 Total: -48.94 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.47 Total: -10.45 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.09 Total: 21.60 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -33.19 -5.48 -38.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306753560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.585 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds