Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99605 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99915 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00011 * 3 2 1 7 7 C 1.38809 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00298 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.01763 * 325.70384 * 10 9 7 12 12 C 1.53883 * 110.03115 * 87.08905 * 10 9 7 13 13 C 1.54271 * 106.59285 * 119.28549 * 12 10 9 14 14 C 1.54882 * 104.19932 * 23.61342 * 13 12 10 15 15 C 1.54259 * 110.03558 * 204.30800 * 10 9 7 16 16 H 1.08997 * 110.48439 * 335.78703 * 15 10 9 17 17 O 1.42908 * 110.48529 * 98.42597 * 15 10 9 18 18 H 0.97000 * 119.99327 * 180.02562 * 1 2 3 19 19 H 0.96992 * 119.99688 * 359.97438 * 9 7 2 20 20 H 1.08995 * 110.02963 * 238.56922 * 12 10 9 21 21 H 1.08998 * 110.03252 * 359.95820 * 12 10 9 22 22 H 1.09007 * 110.47767 * 142.29073 * 13 12 10 23 23 H 1.09001 * 110.48690 * 264.92822 * 13 12 10 24 24 H 1.09005 * 110.75783 * 80.36874 * 14 13 12 25 25 H 1.08994 * 110.75657 * 203.74242 * 14 13 12 26 26 H 0.96700 * 113.99818 * 180.02562 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9776 -3.5568 -0.5766 12 6 2.3854 -4.0765 1.4444 13 6 1.6926 -5.4353 1.6759 14 6 1.5257 -6.0239 0.2530 15 6 1.1787 -4.7748 -0.5960 16 1 0.1227 -4.5252 -0.4932 17 8 1.5109 -4.9937 -1.9686 18 1 -0.4849 -0.8401 0.0004 19 1 0.3558 -2.3881 0.0005 20 1 3.4633 -4.1811 1.5676 21 1 1.9998 -3.3359 2.1450 22 1 2.3207 -6.0845 2.2860 23 1 0.7198 -5.2923 2.1462 24 1 2.4563 -6.4766 -0.0894 25 1 0.7108 -6.7472 0.2273 26 1 0.9876 -5.6867 -2.3942 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306753560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = -76.053342 kcal Electronic energy + Delta-G solvation = -10138.952746 eV Core-core repulsion = 8216.236095 eV Total energy + Delta-G solvation = -1922.716651 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.87002 -36.67331 -35.50328 -32.40207 -28.62736 -27.90876 -25.24003 -21.84958 -21.00585 -19.56961 -18.34502 -17.26717 -16.03602 -15.67307 -15.48830 -14.75651 -14.63889 -13.65956 -13.36593 -12.91452 -12.67590 -12.46083 -11.99321 -11.89803 -11.68192 -11.44828 -11.24854 -11.01471 -10.81901 -9.15293 -8.43309 -5.36252 1.56070 1.66887 1.83512 2.68974 3.25773 3.37245 3.55387 3.70500 3.99931 4.13670 4.36529 4.52927 4.60279 4.75357 4.78712 4.99042 5.12435 5.21926 5.33988 5.41037 5.58163 6.45559 6.91631 7.06176 7.95873 8.07306 9.08690 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070467 B = 0.012612 C = 0.011879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.253766 B = 2219.640335 C = 2356.582413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.106 4.106 3 Si 1.130 2.870 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.332 4.332 8 H 0.062 0.938 9 N -0.746 5.746 10 C 0.169 3.831 11 H 0.034 0.966 12 C -0.138 4.138 13 C -0.112 4.112 14 C -0.137 4.137 15 C 0.093 3.907 16 H 0.052 0.948 17 O -0.580 6.580 18 H 0.242 0.758 19 H 0.359 0.641 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -12.007 1.347 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.297 4.297 3 Si 0.954 3.046 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.080 0.920 9 N -0.388 5.388 10 C 0.061 3.939 11 H 0.052 0.948 12 C -0.178 4.178 13 C -0.150 4.150 14 C -0.175 4.175 15 C 0.033 3.967 16 H 0.069 0.931 17 O -0.388 6.388 18 H 0.053 0.947 19 H 0.191 0.809 20 H 0.082 0.918 21 H 0.064 0.936 22 H 0.107 0.893 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.683 -9.882 1.458 10.646 hybrid contribution -0.682 -1.873 -0.191 2.003 sum 3.001 -11.755 1.267 12.198 Atomic orbital electron populations 1.70995 1.07079 1.27729 1.56390 1.27294 0.97178 1.04718 1.00510 0.82611 0.73390 0.71446 0.77156 1.20585 1.21536 1.20153 1.20384 0.92187 0.87160 1.46637 0.92007 1.42652 1.04421 1.01733 1.90020 1.21012 0.94007 0.84550 0.94381 0.94754 1.22722 1.00350 0.97770 0.96974 1.22225 1.00830 0.95029 0.96877 1.23061 1.03222 0.96319 0.94931 1.22980 0.97059 0.95360 0.81290 0.93054 1.86540 1.65571 1.61846 1.24858 0.94724 0.80915 0.91809 0.93554 0.89259 0.91637 0.89882 0.88755 0.75922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.07 13.70 21.65 0.30 -62.77 15 2 C -0.11 -6.44 5.50 84.86 0.47 -5.97 15 3 Si 1.13 53.85 29.92 68.60 2.05 55.90 15 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 15 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.33 -19.86 9.96 84.03 0.84 -19.02 15 8 H 0.06 3.64 7.83 -2.91 -0.02 3.61 15 9 N -0.75 -40.43 5.03 -319.51 -1.61 -42.04 15 10 C 0.17 7.42 3.31 45.72 0.15 7.57 15 11 H 0.03 1.66 8.01 -2.38 -0.02 1.64 15 12 C -0.14 -5.08 6.59 31.32 0.21 -4.88 15 13 C -0.11 -3.02 6.83 31.67 0.22 -2.80 15 14 C -0.14 -3.44 6.62 31.91 0.21 -3.23 15 15 C 0.09 3.22 3.93 31.69 0.12 3.35 15 16 H 0.05 1.85 7.73 -2.39 -0.02 1.83 15 17 O -0.58 -19.88 13.37 -148.98 -1.99 -21.87 15 18 H 0.24 15.67 6.77 -92.71 -0.63 15.04 15 19 H 0.36 20.04 6.38 -92.71 -0.59 19.45 15 20 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.05 1.95 7.92 -2.39 -0.02 1.93 15 22 H 0.09 1.93 8.14 -2.38 -0.02 1.91 15 23 H 0.06 1.74 8.14 -2.39 -0.02 1.73 15 24 H 0.08 1.96 8.14 -2.38 -0.02 1.94 15 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 15 26 H 0.39 8.70 9.12 -74.06 -0.68 8.02 15 Total: -1.00 -72.15 220.56 1.01 -71.13 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.05 Total: 24.64 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 2.21 Total: -24.99 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -1.31 Total: -104.81 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.99 Total: -21.87 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 2.05 Total: 55.90 kcal Total: -72.15 1.01 -71.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306753560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.920 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds