Wall clock time and date at job start Mon Mar 30 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01813 * 325.05409 * 10 9 7 12 12 C 1.54270 * 110.03594 * 86.44849 * 10 9 7 13 13 C 1.54885 * 104.19651 * 142.89371 * 12 10 9 14 14 C 1.54888 * 102.75181 * 322.06070 * 13 12 10 15 15 C 1.53876 * 110.03394 * 203.61625 * 10 9 7 16 16 H 1.09000 * 110.03036 * 121.42690 * 15 10 9 17 17 O 1.42898 * 110.02979 * 0.02562 * 15 10 9 18 18 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 19 19 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 20 20 H 1.09004 * 110.48577 * 261.57363 * 12 10 9 21 21 H 1.09000 * 110.48401 * 24.08401 * 12 10 9 22 22 H 1.09001 * 110.75905 * 80.37452 * 13 12 10 23 23 H 1.08999 * 110.75666 * 203.74545 * 13 12 10 24 24 H 1.09000 * 110.49095 * 156.61751 * 14 13 12 25 25 H 1.09001 * 110.48513 * 279.26616 * 14 13 12 26 26 H 0.96702 * 114.00084 * 180.02562 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9720 -3.5599 -0.5875 12 6 2.3989 -4.0703 1.4450 13 6 2.2405 -5.6110 1.4470 14 6 1.0099 -5.8294 0.5323 15 6 1.1748 -4.7753 -0.5819 16 1 1.6603 -5.2220 -1.4496 17 8 -0.1013 -4.2492 -0.9517 18 1 -0.4850 -0.8401 -0.0004 19 1 0.3556 -2.3880 -0.0016 20 1 3.4239 -3.7918 1.6899 21 1 1.7020 -3.6123 2.1469 22 1 3.1243 -6.0908 1.0265 23 1 2.0431 -5.9777 2.4543 24 1 1.0211 -6.8347 0.1110 25 1 0.0872 -5.6573 1.0866 26 1 -0.7047 -4.9066 -1.3244 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306753562.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:42 Heat of formation + Delta-G solvation = -45.617312 kcal Electronic energy + Delta-G solvation = -10235.936565 eV Core-core repulsion = 8314.539719 eV Total energy + Delta-G solvation = -1921.396846 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.40168 -34.69496 -33.66896 -30.31339 -27.16091 -26.13231 -23.00323 -20.44560 -19.30619 -17.62938 -16.39844 -15.52175 -14.45758 -13.94191 -13.57658 -13.15668 -13.08289 -12.08165 -11.62563 -10.93626 -10.73601 -10.63243 -10.52398 -10.25559 -10.06237 -9.86213 -9.42702 -9.02680 -8.75928 -6.83994 -5.96213 -2.93037 3.57685 3.62284 3.79643 4.62213 4.81857 5.03592 5.05559 5.36998 5.65891 5.75535 5.80309 5.96004 6.02920 6.09437 6.23220 6.39097 6.57920 6.63967 6.75549 7.09512 7.90087 8.15153 8.93746 9.44041 10.30735 10.49060 11.53233 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073896 B = 0.013463 C = 0.012116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.818713 B = 2079.239895 C = 2310.502903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.048 4.048 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.297 1.297 7 C -0.330 4.330 8 H 0.061 0.939 9 N -0.722 5.722 10 C 0.184 3.816 11 H 0.052 0.948 12 C -0.143 4.143 13 C -0.122 4.122 14 C -0.155 4.155 15 C 0.091 3.909 16 H 0.049 0.951 17 O -0.547 6.547 18 H 0.258 0.742 19 H 0.379 0.621 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -10.998 0.441 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.246 4.246 3 Si 0.911 3.089 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.461 4.461 8 H 0.079 0.921 9 N -0.366 5.366 10 C 0.073 3.927 11 H 0.070 0.930 12 C -0.183 4.183 13 C -0.160 4.160 14 C -0.193 4.193 15 C 0.031 3.969 16 H 0.067 0.933 17 O -0.350 6.350 18 H 0.069 0.931 19 H 0.215 0.785 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.405 -8.725 0.639 9.387 hybrid contribution -0.208 -2.353 -0.176 2.369 sum 3.197 -11.078 0.464 11.539 Atomic orbital electron populations 1.70817 1.06008 1.28744 1.53541 1.25739 0.97145 1.00838 1.00854 0.83248 0.74156 0.75758 0.75714 1.21092 1.22417 1.22420 1.20089 0.91804 0.86106 1.48146 0.92121 1.42238 1.05631 0.99733 1.88992 1.20819 0.93196 0.85785 0.92924 0.93010 1.23181 1.01167 0.93299 1.00703 1.22365 0.97125 0.97776 0.98778 1.23088 0.99660 0.98325 0.98261 1.22815 0.85154 0.94166 0.94753 0.93292 1.86637 1.25244 1.38765 1.84391 0.93056 0.78479 0.92548 0.91297 0.92024 0.92225 0.92346 0.90915 0.79081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.90 13.70 55.49 0.76 -30.14 15 2 C -0.05 -1.48 5.50 -17.43 -0.10 -1.57 15 3 Si 1.08 27.05 29.92 -169.99 -5.09 21.97 15 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 5 H -0.30 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.30 -7.09 7.11 56.52 0.40 -6.68 15 7 C -0.33 -9.87 9.96 -15.06 -0.15 -10.02 15 8 H 0.06 1.77 7.83 -52.49 -0.41 1.36 15 9 N -0.72 -19.73 4.88 -52.34 -0.26 -19.98 15 10 C 0.18 4.01 3.55 -66.81 -0.24 3.77 15 11 H 0.05 1.15 8.09 -51.93 -0.42 0.72 15 12 C -0.14 -2.73 6.53 -25.07 -0.16 -2.90 15 13 C -0.12 -1.81 6.91 -24.74 -0.17 -1.98 15 14 C -0.16 -2.27 6.56 -25.07 -0.16 -2.44 15 15 C 0.09 1.62 4.26 -25.61 -0.11 1.51 15 16 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 17 O -0.55 -10.43 11.42 -35.23 -0.40 -10.83 15 18 H 0.26 8.45 6.77 -40.82 -0.28 8.18 15 19 H 0.38 10.91 5.19 -40.82 -0.21 10.70 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.07 1.47 8.05 -51.93 -0.42 1.05 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 1.11 8.08 -51.93 -0.42 0.69 15 26 H 0.36 4.85 9.11 45.56 0.42 5.27 15 LS Contribution 218.34 15.07 3.29 3.29 Total: -1.00 -34.05 218.34 -5.44 -39.49 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -2.65 Total: 9.83 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.09 Total: -13.62 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.50 Total: -50.12 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.40 Total: -10.83 kcal Atomic # 14 Polarization: 27.05 SS G_CDS: -5.09 Total: 21.97 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -34.05 -5.44 -39.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306753562.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.130 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds