Wall clock time and date at job start Mon Mar 30 2020 02:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00325 * 2 1 4 4 H 1.48501 * 109.47546 * 240.00601 * 3 2 1 5 5 H 1.48505 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47058 * 120.00477 * 3 2 1 7 7 C 1.38809 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00365 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00296 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.81804 * 31.66278 * 10 9 7 12 12 C 1.54888 * 110.75896 * 268.32496 * 10 9 7 13 13 C 1.54265 * 104.19721 * 203.74163 * 12 10 9 14 14 C 1.53873 * 106.59997 * 23.61451 * 13 12 10 15 15 C 1.54268 * 106.59703 * 359.97438 * 14 13 12 16 16 H 1.09002 * 110.48435 * 95.07241 * 15 14 13 17 17 O 1.42905 * 110.48606 * 217.58190 * 15 14 13 18 18 H 0.97003 * 119.99880 * 359.97438 * 1 2 3 19 19 H 0.97005 * 119.99606 * 359.97438 * 9 7 2 20 20 H 1.09007 * 110.48520 * 85.06311 * 12 10 9 21 21 H 1.08998 * 110.59686 * 322.47841 * 12 10 9 22 22 H 1.08993 * 110.03585 * 264.31946 * 13 12 10 23 23 H 1.09005 * 110.02598 * 142.89513 * 13 12 10 24 24 H 1.09002 * 110.03017 * 240.71676 * 14 13 12 25 25 H 1.08992 * 110.03600 * 119.28231 * 14 13 12 26 26 H 0.96696 * 114.00149 * 296.75856 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0026 -3.5587 0.5343 12 6 2.2957 -4.1534 -1.4482 13 6 2.4849 -5.6771 -1.2993 14 6 1.7853 -6.0810 0.0104 15 6 1.1960 -4.7884 0.6119 16 1 0.1523 -4.6730 0.3196 17 8 1.3172 -4.7989 2.0358 18 1 -0.4850 0.8401 0.0004 19 1 0.3555 -2.3881 0.0002 20 1 3.1931 -3.6965 -1.8657 21 1 1.4311 -3.9358 -2.0752 22 1 3.5465 -5.9181 -1.2453 23 1 2.0266 -6.1943 -2.1423 24 1 2.5075 -6.5179 0.7001 25 1 0.9876 -6.7942 -0.1969 26 1 0.8200 -5.5069 2.4676 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306753564.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:43 Heat of formation + Delta-G solvation = -51.700640 kcal Electronic energy + Delta-G solvation = -10087.690795 eV Core-core repulsion = 8166.030156 eV Total energy + Delta-G solvation = -1921.660639 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.25196 -34.80079 -33.44877 -30.55456 -27.17112 -26.39028 -23.07005 -20.09636 -19.66095 -17.31818 -16.48254 -15.38160 -14.62237 -14.07559 -13.41217 -12.93505 -12.53752 -11.93588 -11.87023 -11.48828 -10.80923 -10.77112 -10.70213 -10.19529 -10.10364 -9.74070 -9.59155 -9.46378 -8.82870 -6.89373 -5.70802 -2.98997 3.48611 3.52324 3.53800 4.62012 4.73020 5.06728 5.13033 5.38042 5.65244 5.80337 5.93755 5.93976 6.09283 6.13536 6.29668 6.43771 6.55363 6.65213 6.81027 7.09362 7.75468 8.16222 8.47690 9.58434 10.15998 10.50942 11.52108 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.071211 B = 0.012475 C = 0.011610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.104001 B = 2243.950556 C = 2411.227990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.185 3.815 11 H 0.064 0.936 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.154 4.154 15 C 0.087 3.913 16 H 0.058 0.942 17 O -0.556 6.556 18 H 0.255 0.745 19 H 0.384 0.616 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 -10.736 -0.726 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.073 3.927 11 H 0.082 0.918 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.193 4.193 15 C 0.027 3.973 16 H 0.076 0.924 17 O -0.359 6.359 18 H 0.065 0.935 19 H 0.218 0.782 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.128 -10.034 -0.838 10.544 hybrid contribution -0.255 0.354 0.025 0.437 sum 2.873 -9.680 -0.814 10.130 Atomic orbital electron populations 1.69657 1.05122 1.25702 1.57868 1.24744 0.95537 0.97694 1.03107 0.86246 0.78495 0.83496 0.77836 1.21291 1.21708 1.21260 1.19230 0.90996 0.84110 1.42457 0.91206 1.42308 1.05667 0.99678 1.87909 1.21107 0.94678 0.85089 0.91779 0.91828 1.23026 1.01805 0.93201 1.00436 1.22003 0.99808 0.97542 0.96447 1.22793 1.00151 0.98145 0.98205 1.23126 0.98925 0.95178 0.80072 0.92423 1.86656 1.74131 1.55715 1.19401 0.93514 0.78250 0.91947 0.91600 0.92306 0.92550 0.91354 0.92341 0.79146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.06 55.49 0.72 -28.36 15 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 15 3 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 15 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 7 C -0.24 -6.87 9.96 -15.06 -0.15 -7.02 15 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 15 9 N -0.72 -19.05 5.23 -51.51 -0.27 -19.32 15 10 C 0.18 3.98 3.28 -65.95 -0.22 3.77 15 11 H 0.06 1.45 8.09 -51.93 -0.42 1.03 15 12 C -0.14 -2.65 6.51 -25.07 -0.16 -2.81 15 13 C -0.12 -1.74 6.80 -25.61 -0.17 -1.92 15 14 C -0.15 -2.20 6.56 -25.61 -0.17 -2.37 15 15 C 0.09 1.57 3.85 -25.08 -0.10 1.47 15 16 H 0.06 1.05 8.02 -51.93 -0.42 0.64 15 17 O -0.56 -10.12 13.38 -35.23 -0.47 -10.59 15 18 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 19 H 0.38 10.76 7.76 -40.82 -0.32 10.44 15 20 H 0.06 1.15 8.14 -51.92 -0.42 0.73 15 21 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.07 0.92 8.07 -51.93 -0.42 0.50 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.36 4.59 9.12 45.56 0.42 5.00 15 LS Contribution 222.90 15.07 3.36 3.36 Total: -1.00 -32.18 222.90 -5.56 -37.74 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -2.82 Total: 8.60 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.06 Total: -9.43 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.46 Total: -47.68 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.47 Total: -10.59 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -32.18 -5.56 -37.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306753564.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.964 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds