Wall clock time and date at job start Mon Mar 30 2020 02:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00325 * 2 1 4 4 H 1.48501 * 109.47546 * 240.00601 * 3 2 1 5 5 H 1.48505 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47058 * 120.00477 * 3 2 1 7 7 C 1.38809 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00365 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00296 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.81804 * 31.66278 * 10 9 7 12 12 C 1.54888 * 110.75896 * 268.32496 * 10 9 7 13 13 C 1.54265 * 104.19721 * 203.74163 * 12 10 9 14 14 C 1.53873 * 106.59997 * 23.61451 * 13 12 10 15 15 C 1.54268 * 106.59703 * 359.97438 * 14 13 12 16 16 H 1.09002 * 110.48435 * 95.07241 * 15 14 13 17 17 O 1.42905 * 110.48606 * 217.58190 * 15 14 13 18 18 H 0.97003 * 119.99880 * 359.97438 * 1 2 3 19 19 H 0.97005 * 119.99606 * 359.97438 * 9 7 2 20 20 H 1.09007 * 110.48520 * 85.06311 * 12 10 9 21 21 H 1.08998 * 110.59686 * 322.47841 * 12 10 9 22 22 H 1.08993 * 110.03585 * 264.31946 * 13 12 10 23 23 H 1.09005 * 110.02598 * 142.89513 * 13 12 10 24 24 H 1.09002 * 110.03017 * 240.71676 * 14 13 12 25 25 H 1.08992 * 110.03600 * 119.28231 * 14 13 12 26 26 H 0.96696 * 114.00149 * 296.75856 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0026 -3.5587 0.5343 12 6 2.2957 -4.1534 -1.4482 13 6 2.4849 -5.6771 -1.2993 14 6 1.7853 -6.0810 0.0104 15 6 1.1960 -4.7884 0.6119 16 1 0.1523 -4.6730 0.3196 17 8 1.3172 -4.7989 2.0358 18 1 -0.4850 0.8401 0.0004 19 1 0.3555 -2.3881 0.0002 20 1 3.1931 -3.6965 -1.8657 21 1 1.4311 -3.9358 -2.0752 22 1 3.5465 -5.9181 -1.2453 23 1 2.0266 -6.1943 -2.1423 24 1 2.5075 -6.5179 0.7001 25 1 0.9876 -6.7942 -0.1969 26 1 0.8200 -5.5069 2.4676 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306753564.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:43 Heat of formation + Delta-G solvation = -76.677555 kcal Electronic energy + Delta-G solvation = -10088.773875 eV Core-core repulsion = 8166.030156 eV Total energy + Delta-G solvation = -1922.743719 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.71003 -36.39868 -35.28730 -32.56333 -28.57060 -28.10737 -25.11727 -21.42782 -21.24002 -19.32292 -18.04154 -17.07410 -16.05774 -15.98536 -15.17780 -14.47491 -14.19352 -13.52487 -13.42536 -13.06986 -12.76731 -12.61046 -12.22029 -12.04051 -11.77952 -11.35959 -11.27771 -10.95502 -10.76338 -9.01601 -7.95715 -5.24508 1.45368 1.49627 1.55618 2.55280 3.34744 3.43516 3.65831 3.82324 4.15679 4.28865 4.46816 4.60637 4.70606 4.84639 4.86757 5.09930 5.15242 5.31010 5.41872 5.46331 5.55177 6.26246 7.02039 7.31325 8.06736 8.30735 9.27910 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.071211 B = 0.012475 C = 0.011610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.104001 B = 2243.950556 C = 2411.227990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.732 5.732 10 C 0.166 3.834 11 H 0.045 0.955 12 C -0.138 4.138 13 C -0.111 4.111 14 C -0.141 4.141 15 C 0.090 3.910 16 H 0.051 0.949 17 O -0.580 6.580 18 H 0.252 0.748 19 H 0.372 0.628 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -12.048 -0.985 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.057 3.943 11 H 0.063 0.937 12 C -0.178 4.178 13 C -0.149 4.149 14 C -0.179 4.179 15 C 0.030 3.970 16 H 0.069 0.931 17 O -0.387 6.387 18 H 0.060 0.940 19 H 0.204 0.796 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.006 -11.408 -1.096 12.140 hybrid contribution -0.506 0.697 0.143 0.873 sum 3.499 -10.711 -0.953 11.308 Atomic orbital electron populations 1.69820 1.06649 1.26189 1.59540 1.25609 0.96485 1.01217 1.03685 0.85167 0.77204 0.78920 0.78211 1.20126 1.21857 1.20562 1.19613 0.91346 0.85414 1.41248 0.90973 1.42487 1.05244 1.00952 1.88379 1.21440 0.94177 0.84589 0.94077 0.93670 1.22844 1.00915 0.96451 0.97610 1.21988 1.01277 0.94088 0.97585 1.22710 1.01113 0.96350 0.97744 1.22990 0.98018 0.95713 0.80266 0.93079 1.86584 1.74932 1.57537 1.19676 0.93951 0.79646 0.92589 0.92855 0.90711 0.90142 0.90063 0.89426 0.76302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.60 13.06 21.65 0.28 -61.32 15 2 C -0.08 -4.67 5.50 84.86 0.47 -4.21 15 3 Si 0.98 47.73 29.55 68.60 2.03 49.76 15 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 15 6 H -0.28 -13.24 7.11 99.48 0.71 -12.53 15 7 C -0.24 -14.40 9.96 84.03 0.84 -13.57 15 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 15 9 N -0.73 -39.72 5.23 -316.89 -1.66 -41.38 15 10 C 0.17 7.17 3.28 46.28 0.15 7.32 15 11 H 0.05 2.08 8.09 -2.39 -0.02 2.07 15 12 C -0.14 -4.94 6.51 31.67 0.21 -4.73 15 13 C -0.11 -2.86 6.80 31.32 0.21 -2.64 15 14 C -0.14 -3.51 6.56 31.32 0.21 -3.31 15 15 C 0.09 3.12 3.85 31.66 0.12 3.24 15 16 H 0.05 1.83 8.02 -2.39 -0.02 1.81 15 17 O -0.58 -20.40 13.38 -148.98 -1.99 -22.40 15 18 H 0.25 15.41 8.31 -92.71 -0.77 14.63 15 19 H 0.37 21.48 7.76 -92.70 -0.72 20.76 15 20 H 0.06 2.03 8.14 -2.38 -0.02 2.01 15 21 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.08 1.73 8.14 -2.38 -0.02 1.71 15 24 H 0.08 1.86 8.07 -2.39 -0.02 1.84 15 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.39 9.02 9.12 -74.06 -0.68 8.35 15 Total: -1.00 -69.39 222.90 0.64 -68.75 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.22 Total: 24.48 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 2.20 Total: -17.89 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -1.37 Total: -102.70 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.99 Total: -22.40 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -69.39 0.64 -68.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306753564.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.931 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds