Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46958 * 270.00600 * 3 2 1 5 5 H 1.48503 * 109.46857 * 30.00047 * 3 2 1 6 6 H 1.48498 * 109.46878 * 150.00245 * 3 2 1 7 7 C 1.38807 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00715 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99901 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.43361 * 32.46248 * 10 9 7 12 12 C 1.54893 * 110.59870 * 269.84062 * 10 9 7 13 13 C 1.54887 * 102.74533 * 203.32520 * 12 10 9 14 14 C 1.54266 * 104.19888 * 37.94403 * 13 12 10 15 15 C 1.53872 * 106.59640 * 336.38805 * 14 13 12 16 16 H 1.08996 * 110.03362 * 240.71095 * 15 14 13 17 17 O 1.42906 * 110.02814 * 119.28555 * 15 14 13 18 18 H 0.97001 * 119.99907 * 359.97438 * 1 2 3 19 19 H 0.97001 * 120.00297 * 0.02562 * 9 7 2 20 20 H 1.09001 * 110.75228 * 85.01255 * 12 10 9 21 21 H 1.09000 * 110.75571 * 321.63889 * 12 10 9 22 22 H 1.09001 * 110.48816 * 279.26329 * 13 12 10 23 23 H 1.09004 * 110.48531 * 156.62545 * 13 12 10 24 24 H 1.09003 * 110.03179 * 95.67576 * 14 13 12 25 25 H 1.09003 * 110.02980 * 217.05505 * 14 13 12 26 26 H 0.96696 * 114.00027 * 61.45223 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5558 -3.2315 -0.5489 12 6 4.3886 -2.9405 1.4488 13 6 5.6155 -3.8704 1.2787 14 6 6.4720 -3.1736 0.2013 15 6 5.5161 -2.2838 -0.6123 16 1 5.5133 -2.5960 -1.6566 17 8 5.9157 -0.9155 -0.5110 18 1 -0.4850 0.8401 0.0004 19 1 3.8646 -0.3621 -0.0007 20 1 3.5368 -3.4934 1.8448 21 1 4.6321 -2.0930 2.0895 22 1 5.3021 -4.8571 0.9376 23 1 6.1686 -3.9474 2.2149 24 1 7.2407 -2.5618 0.6735 25 1 6.9338 -3.9178 -0.4475 26 1 6.7999 -0.7371 -0.8595 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306753566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = -44.820718 kcal Electronic energy + Delta-G solvation = -10230.949665 eV Core-core repulsion = 8309.587362 eV Total energy + Delta-G solvation = -1921.362303 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.47928 -34.67554 -33.49819 -30.89087 -27.33926 -26.75460 -22.61893 -20.29687 -19.58071 -17.60143 -16.79661 -15.19681 -14.66446 -14.20253 -13.69134 -13.05667 -12.45721 -12.25956 -11.95261 -11.13453 -10.95462 -10.72135 -10.65225 -10.38946 -10.14568 -9.85724 -9.55682 -9.46737 -8.79612 -7.11778 -5.68421 -3.01446 3.48680 3.54238 3.57981 4.57188 4.71046 4.99554 5.01461 5.28834 5.61129 5.67504 5.72949 5.95688 5.98863 6.04110 6.19382 6.33465 6.43085 6.59586 6.78967 7.02639 7.96490 8.16640 8.52644 9.35522 10.08026 10.31557 11.50063 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.065129 B = 0.015364 C = 0.013411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.814483 B = 1822.028461 C = 2087.266653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.242 4.242 8 H 0.088 0.912 9 N -0.738 5.738 10 C 0.187 3.813 11 H 0.068 0.932 12 C -0.143 4.143 13 C -0.122 4.122 14 C -0.154 4.154 15 C 0.088 3.912 16 H 0.052 0.948 17 O -0.555 6.555 18 H 0.258 0.742 19 H 0.374 0.626 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.326 -5.330 -0.032 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.106 0.894 9 N -0.380 5.380 10 C 0.076 3.924 11 H 0.086 0.914 12 C -0.184 4.184 13 C -0.161 4.161 14 C -0.193 4.193 15 C 0.028 3.972 16 H 0.070 0.930 17 O -0.359 6.359 18 H 0.068 0.932 19 H 0.209 0.791 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 12.470 -5.314 0.217 13.557 hybrid contribution 1.141 1.054 -0.216 1.568 sum 13.611 -4.260 0.001 14.262 Atomic orbital electron populations 1.69717 1.05116 1.25749 1.57966 1.24654 0.95232 0.97292 1.02157 0.86507 0.79426 0.84686 0.77851 1.21202 1.21997 1.19826 1.19150 0.80839 0.94648 1.42597 0.89390 1.42598 1.03519 1.02539 1.89387 1.21092 0.88286 0.89908 0.93121 0.91401 1.23210 0.96203 0.98490 1.00490 1.22250 0.97280 0.98669 0.97852 1.22891 0.98596 0.99337 0.98428 1.22878 0.95824 0.81048 0.97424 0.92975 1.86552 1.36910 1.26715 1.85730 0.93193 0.79083 0.91888 0.91604 0.91986 0.92389 0.91384 0.92055 0.78812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.41 13.97 55.49 0.78 -29.64 15 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 15 3 Si 0.88 23.53 27.74 -169.99 -4.71 18.81 15 4 H -0.29 -7.52 7.11 56.52 0.40 -7.12 15 5 H -0.29 -7.79 7.11 56.52 0.40 -7.39 15 6 H -0.27 -7.04 6.52 56.52 0.37 -6.67 15 7 C -0.24 -7.18 10.44 -15.06 -0.16 -7.33 15 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 15 9 N -0.74 -18.88 4.95 -51.82 -0.26 -19.14 15 10 C 0.19 3.83 3.46 -66.27 -0.23 3.60 15 11 H 0.07 1.40 8.09 -51.93 -0.42 0.98 15 12 C -0.14 -2.63 6.58 -24.74 -0.16 -2.79 15 13 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 15 14 C -0.15 -2.04 6.60 -25.61 -0.17 -2.21 15 15 C 0.09 1.46 4.20 -25.61 -0.11 1.35 15 16 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 17 O -0.56 -9.58 11.59 -35.23 -0.41 -9.99 15 18 H 0.26 7.97 8.31 -40.82 -0.34 7.63 15 19 H 0.37 9.73 4.27 -40.82 -0.17 9.55 15 20 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 24 H 0.07 0.85 7.95 -51.93 -0.41 0.44 15 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.37 4.27 9.10 45.56 0.41 4.69 15 LS Contribution 217.22 15.07 3.27 3.27 Total: -1.00 -33.47 217.22 -5.14 -38.61 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -2.72 Total: 7.37 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.09 Total: -9.30 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.52 Total: -48.78 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.41 Total: -9.99 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.71 Total: 18.81 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -33.47 -5.14 -38.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306753566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.207 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds