Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46958 * 270.00600 * 3 2 1 5 5 H 1.48503 * 109.46857 * 30.00047 * 3 2 1 6 6 H 1.48498 * 109.46878 * 150.00245 * 3 2 1 7 7 C 1.38807 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00715 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99901 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.43361 * 32.46248 * 10 9 7 12 12 C 1.54893 * 110.59870 * 269.84062 * 10 9 7 13 13 C 1.54887 * 102.74533 * 203.32520 * 12 10 9 14 14 C 1.54266 * 104.19888 * 37.94403 * 13 12 10 15 15 C 1.53872 * 106.59640 * 336.38805 * 14 13 12 16 16 H 1.08996 * 110.03362 * 240.71095 * 15 14 13 17 17 O 1.42906 * 110.02814 * 119.28555 * 15 14 13 18 18 H 0.97001 * 119.99907 * 359.97438 * 1 2 3 19 19 H 0.97001 * 120.00297 * 0.02562 * 9 7 2 20 20 H 1.09001 * 110.75228 * 85.01255 * 12 10 9 21 21 H 1.09000 * 110.75571 * 321.63889 * 12 10 9 22 22 H 1.09001 * 110.48816 * 279.26329 * 13 12 10 23 23 H 1.09004 * 110.48531 * 156.62545 * 13 12 10 24 24 H 1.09003 * 110.03179 * 95.67576 * 14 13 12 25 25 H 1.09003 * 110.02980 * 217.05505 * 14 13 12 26 26 H 0.96696 * 114.00027 * 61.45223 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5558 -3.2315 -0.5489 12 6 4.3886 -2.9405 1.4488 13 6 5.6155 -3.8704 1.2787 14 6 6.4720 -3.1736 0.2013 15 6 5.5161 -2.2838 -0.6123 16 1 5.5133 -2.5960 -1.6566 17 8 5.9157 -0.9155 -0.5110 18 1 -0.4850 0.8401 0.0004 19 1 3.8646 -0.3621 -0.0007 20 1 3.5368 -3.4934 1.8448 21 1 4.6321 -2.0930 2.0895 22 1 5.3021 -4.8571 0.9376 23 1 6.1686 -3.9474 2.2149 24 1 7.2407 -2.5618 0.6735 25 1 6.9338 -3.9178 -0.4475 26 1 6.7999 -0.7371 -0.8595 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306753566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = -71.044364 kcal Electronic energy + Delta-G solvation = -10232.086807 eV Core-core repulsion = 8309.587362 eV Total energy + Delta-G solvation = -1922.499446 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.84993 -36.22293 -35.28426 -33.01030 -28.69578 -28.34687 -24.68946 -21.50045 -21.20581 -19.65973 -18.20656 -16.77543 -16.36799 -15.81199 -15.12652 -14.81910 -14.30876 -13.97287 -13.44561 -13.04009 -12.68539 -12.26307 -12.04283 -11.94348 -11.87300 -11.69424 -11.28891 -10.95945 -10.74212 -9.25025 -8.03631 -5.33949 1.37215 1.38976 1.49426 2.48373 3.23505 3.30708 3.76743 3.79033 4.00915 4.23979 4.50486 4.59841 4.69003 4.86710 4.91978 5.09375 5.17271 5.23081 5.46799 5.51378 5.75154 6.23262 6.98108 7.15166 7.91894 8.12114 9.18210 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.065129 B = 0.015364 C = 0.013411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.814483 B = 1822.028461 C = 2087.266653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.260 1.260 7 C -0.231 4.231 8 H 0.057 0.943 9 N -0.745 5.745 10 C 0.163 3.837 11 H 0.059 0.941 12 C -0.142 4.142 13 C -0.113 4.113 14 C -0.142 4.142 15 C 0.093 3.907 16 H 0.065 0.935 17 O -0.581 6.581 18 H 0.258 0.742 19 H 0.373 0.627 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.113 -5.522 -0.156 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.185 1.185 7 C -0.362 4.362 8 H 0.075 0.925 9 N -0.388 5.388 10 C 0.054 3.946 11 H 0.077 0.923 12 C -0.183 4.183 13 C -0.151 4.151 14 C -0.180 4.180 15 C 0.033 3.967 16 H 0.083 0.917 17 O -0.389 6.389 18 H 0.066 0.934 19 H 0.208 0.792 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 15.328 -5.545 0.090 16.301 hybrid contribution 0.268 1.007 -0.183 1.058 sum 15.597 -4.537 -0.093 16.244 Atomic orbital electron populations 1.69882 1.06918 1.26590 1.60157 1.25463 0.96140 1.01125 1.03031 0.85373 0.78313 0.79823 0.78074 1.20499 1.21967 1.18528 1.19161 0.82867 0.93466 1.40680 0.92463 1.42620 1.02030 1.04515 1.89654 1.21506 0.90491 0.87686 0.94906 0.92304 1.23065 0.98114 0.98780 0.98309 1.22233 0.95243 0.98256 0.99400 1.22825 0.97766 0.99384 0.98023 1.22766 0.93764 0.81757 0.98386 0.91692 1.86465 1.39145 1.27069 1.86257 0.93360 0.79188 0.93364 0.93403 0.90434 0.90466 0.90088 0.88869 0.75896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.53 13.97 21.65 0.30 -65.23 15 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 15 3 Si 0.96 49.08 27.74 68.60 1.90 50.98 15 4 H -0.28 -13.90 7.11 99.48 0.71 -13.20 15 5 H -0.29 -14.90 7.11 99.48 0.71 -14.19 15 6 H -0.26 -12.67 6.52 99.48 0.65 -12.02 15 7 C -0.23 -13.96 10.44 84.03 0.88 -13.08 15 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 15 9 N -0.74 -38.00 4.95 -317.85 -1.57 -39.58 15 10 C 0.16 6.56 3.46 46.07 0.16 6.72 15 11 H 0.06 2.43 8.09 -2.39 -0.02 2.41 15 12 C -0.14 -5.09 6.58 31.89 0.21 -4.88 15 13 C -0.11 -2.78 6.83 31.67 0.22 -2.57 15 14 C -0.14 -3.11 6.60 31.32 0.21 -2.91 15 15 C 0.09 2.80 4.20 31.32 0.13 2.93 15 16 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 17 O -0.58 -18.34 11.59 -148.98 -1.73 -20.07 15 18 H 0.26 16.28 8.31 -92.71 -0.77 15.51 15 19 H 0.37 18.99 4.27 -92.71 -0.40 18.59 15 20 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.08 1.65 8.14 -2.38 -0.02 1.63 15 24 H 0.08 1.62 7.95 -2.39 -0.02 1.60 15 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 26 H 0.39 7.68 9.10 -74.06 -0.67 7.01 15 Total: -1.00 -72.96 217.22 1.22 -71.74 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.04 Total: 19.61 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 2.27 Total: -17.46 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -1.27 Total: -104.81 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.73 Total: -20.07 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.90 Total: 50.98 kcal Total: -72.96 1.22 -71.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306753566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.699 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds