Wall clock time and date at job start Mon Mar 30 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00505 * 2 1 4 4 C 1.53007 * 113.27716 * 313.06404 * 3 2 1 5 5 C 1.53490 * 114.21015 * 179.97438 * 3 2 1 6 6 N 1.47064 * 87.98600 * 220.34285 * 5 3 2 7 7 C 1.36936 * 136.05771 * 207.08307 * 6 5 3 8 8 H 1.08004 * 119.99734 * 350.46701 * 7 6 5 9 9 C 1.38807 * 120.00151 * 170.46921 * 7 6 5 10 10 N 1.31622 * 120.00330 * 157.53311 * 9 7 6 11 11 Si 1.86799 * 119.99763 * 337.52534 * 9 7 6 12 12 H 1.48503 * 109.46824 * 90.00289 * 11 9 7 13 13 H 1.48503 * 109.47100 * 210.00307 * 11 9 7 14 14 H 1.48495 * 109.47323 * 330.00511 * 11 9 7 15 15 C 1.47069 * 87.88470 * 27.34231 * 6 5 3 16 16 H 1.09005 * 109.46422 * 60.00238 * 1 2 3 17 17 H 1.08995 * 109.47156 * 180.02562 * 1 2 3 18 18 H 1.08995 * 109.47524 * 300.00813 * 1 2 3 19 19 H 1.08998 * 109.47096 * 286.92869 * 4 3 2 20 20 H 1.08995 * 109.47171 * 46.93153 * 4 3 2 21 21 H 1.09005 * 109.46699 * 166.93316 * 4 3 2 22 22 H 1.08999 * 113.46871 * 105.56276 * 5 3 2 23 23 H 1.08998 * 113.46809 * 335.12660 * 5 3 2 24 24 H 0.96999 * 119.99614 * 3.62023 * 10 9 7 25 25 H 1.09004 * 113.46846 * 87.43691 * 15 6 5 26 26 H 1.08996 * 113.46492 * 217.87944 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.3796 2.2481 -1.0269 5 6 3.5453 1.3109 0.0006 6 7 3.4892 2.4310 0.9518 7 6 4.2961 3.4878 1.2794 8 1 5.2998 3.5435 0.8845 9 6 3.8242 4.4873 2.1190 10 7 4.6721 5.2418 2.7856 11 14 1.9857 4.7619 2.3026 12 1 1.4693 3.9264 3.4164 13 1 1.7260 6.1942 2.5967 14 1 1.3001 4.3835 1.0409 15 6 2.1881 1.9132 1.4011 16 1 -0.3632 0.5138 -0.8901 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3634 0.5139 0.8898 19 1 1.7004 1.9616 -2.0284 20 1 0.2936 2.1833 -0.9607 21 1 1.6957 3.2712 -0.8230 22 1 3.9788 1.5805 -0.9624 23 1 3.9824 0.4054 0.4215 24 1 5.6266 5.1345 2.6504 25 1 2.2674 1.1665 2.1912 26 1 1.4653 2.6960 1.6311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306770603.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:06 Heat of formation + Delta-G solvation = -2.381079 kcal Electronic energy + Delta-G solvation = -10414.979908 eV Core-core repulsion = 8495.457926 eV Total energy + Delta-G solvation = -1919.521982 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.99106 -37.47525 -34.55798 -31.02364 -28.82509 -27.44446 -26.88132 -23.35211 -20.66008 -19.46271 -17.78419 -17.12478 -16.52599 -15.96673 -15.33696 -15.23830 -14.52961 -14.09348 -13.46897 -13.10468 -12.87538 -12.72367 -12.63925 -12.15332 -11.74455 -11.54521 -11.09284 -10.78251 -10.34928 -9.28690 -8.72538 -5.49972 1.36407 1.47725 1.66587 2.50372 2.63700 2.93024 3.29409 3.46346 3.86192 4.26494 4.47882 4.54687 4.62911 4.63627 4.70239 4.79814 4.91946 4.97101 4.98255 5.18730 5.22252 5.91319 6.32960 6.64139 7.28746 8.24783 8.81385 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.065166 B = 0.017578 C = 0.015490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.568171 B = 1592.560041 C = 1807.148727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.387 6.387 3 C 0.086 3.914 4 C -0.148 4.148 5 C 0.130 3.870 6 N -0.645 5.645 7 C -0.303 4.303 8 H 0.049 0.951 9 C -0.075 4.075 10 N -0.955 5.955 11 Si 1.100 2.900 12 H -0.281 1.281 13 H -0.297 1.297 14 H -0.250 1.250 15 C 0.074 3.926 16 H 0.061 0.939 17 H 0.106 0.894 18 H 0.041 0.959 19 H 0.082 0.918 20 H 0.086 0.914 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.249 0.751 25 H 0.046 0.954 26 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 -8.624 -7.127 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.306 6.306 3 C 0.045 3.955 4 C -0.205 4.205 5 C 0.004 3.996 6 N -0.375 5.375 7 C -0.430 4.430 8 H 0.067 0.933 9 C -0.268 4.268 10 N -0.599 5.599 11 Si 0.926 3.074 12 H -0.208 1.208 13 H -0.225 1.225 14 H -0.176 1.176 15 C -0.051 4.051 16 H 0.079 0.921 17 H 0.124 0.876 18 H 0.060 0.940 19 H 0.100 0.900 20 H 0.104 0.896 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.164 -7.717 -6.308 15.726 hybrid contribution 1.813 -0.544 -0.376 1.930 sum -10.351 -8.261 -6.685 14.835 Atomic orbital electron populations 1.23022 0.79727 1.04061 1.01030 1.87886 1.21645 1.26234 1.94803 1.23285 0.94032 0.83754 0.94397 1.21920 1.01635 0.98650 0.98272 1.22573 0.92920 0.90384 0.93709 1.45535 1.22610 1.26300 1.43012 1.19822 0.94145 0.99304 1.29705 0.93299 1.27053 1.10274 0.94464 0.95050 1.71042 1.02995 1.47122 1.38725 0.83380 0.71202 0.75329 0.77529 1.20798 1.22523 1.17560 1.23525 0.88115 0.96176 0.97270 0.92067 0.87608 0.94041 0.89963 0.89568 0.92439 0.92171 0.93145 0.94147 0.93626 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.36 113.37 1.17 1.56 15 2 O -0.39 -12.28 10.71 -148.98 -1.60 -13.88 15 3 C 0.09 3.09 1.56 -10.37 -0.02 3.07 15 4 C -0.15 -4.54 8.97 71.98 0.65 -3.89 15 5 C 0.13 5.37 8.10 83.18 0.67 6.05 15 6 N -0.64 -32.74 3.37 -738.42 -2.49 -35.23 15 7 C -0.30 -18.12 10.96 84.03 0.92 -17.20 15 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 15 9 C -0.07 -4.54 5.50 84.86 0.47 -4.08 15 10 N -0.96 -62.28 13.71 21.65 0.30 -61.98 15 11 Si 1.10 53.68 25.33 68.60 1.74 55.41 15 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 13 H -0.30 -14.53 7.11 99.48 0.71 -13.82 15 14 H -0.25 -10.77 5.81 99.48 0.58 -10.19 15 15 C 0.07 3.22 6.58 83.27 0.55 3.77 15 16 H 0.06 1.16 6.36 -2.38 -0.02 1.14 15 17 H 0.11 1.82 8.14 -2.39 -0.02 1.80 15 18 H 0.04 0.92 8.14 -2.39 -0.02 0.90 15 19 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.09 2.13 6.12 -2.39 -0.01 2.11 15 21 H 0.06 2.09 7.21 -2.38 -0.02 2.07 15 22 H 0.06 2.35 8.12 -2.39 -0.02 2.33 15 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 24 H 0.25 16.30 8.73 -92.71 -0.81 15.49 15 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.05 2.05 3.69 -2.39 -0.01 2.04 15 Total: -1.00 -68.95 214.15 3.35 -65.60 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: 0.99 Total: 0.80 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.41 Total: -10.72 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -2.19 Total: -97.21 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.60 Total: -13.88 kcal Atomic # 14 Polarization: 53.68 SS G_CDS: 1.74 Total: 55.41 kcal Total: -68.95 3.35 -65.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306770603.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.217 kcal (2) G-P(sol) polarization free energy of solvation -68.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds