Wall clock time and date at job start Mon Mar 30 2020 02:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47111 * 2 1 4 4 C 1.42898 * 114.00309 * 179.97438 * 3 2 1 5 5 C 1.53950 * 113.74250 * 111.25833 * 4 3 2 6 6 N 1.47805 * 86.03824 * 90.88285 * 5 4 3 7 7 C 1.36942 * 134.45487 * 204.64668 * 6 5 4 8 8 H 1.08002 * 119.99602 * 179.86453 * 7 6 5 9 9 C 1.38807 * 120.00184 * 359.86555 * 7 6 5 10 10 N 1.31617 * 119.99858 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00250 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46605 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47103 * 119.99755 * 11 9 7 14 14 H 1.48496 * 109.47077 * 240.00020 * 11 9 7 15 15 C 1.47582 * 91.05413 * 24.54887 * 6 5 4 16 16 H 1.09004 * 109.47125 * 60.00571 * 1 2 3 17 17 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.47201 * 300.00317 * 1 2 3 19 19 H 1.09000 * 109.47659 * 239.99938 * 2 1 3 20 20 H 1.09004 * 109.47125 * 119.99429 * 2 1 3 21 21 H 1.09002 * 112.94238 * 339.66401 * 4 3 2 22 22 H 1.08999 * 113.76704 * 205.15062 * 5 4 3 23 23 H 1.09002 * 113.76463 * 336.53856 * 5 4 3 24 24 H 0.97002 * 120.00155 * 180.02562 * 10 9 7 25 25 H 1.08999 * 113.77186 * 221.15323 * 15 6 5 26 26 H 1.09004 * 113.76624 * 89.74800 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0089 2.0183 -1.3126 6 7 3.8828 3.3495 -0.6826 7 6 3.7531 4.6271 -1.1581 8 1 3.6748 5.4546 -0.4684 9 6 3.7221 4.8587 -2.5264 10 7 3.8170 3.8502 -3.3668 11 14 3.5459 6.6016 -3.1750 12 1 3.4583 7.5478 -2.0338 13 1 4.7259 6.9405 -4.0103 14 1 2.3128 6.7018 -3.9962 15 6 3.9502 2.7488 0.6638 16 1 -0.3633 0.5138 -0.8901 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 1.8934 -0.5138 -0.8899 20 1 1.8933 -0.5138 0.8901 21 1 3.9286 0.5556 0.3498 22 1 5.0394 1.7176 -1.5017 23 1 3.3577 1.8755 -2.1749 24 1 3.7957 4.0121 -4.3230 25 1 3.2522 3.1883 1.3764 26 1 4.9635 2.6632 1.0563 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306831279.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:32 Heat of formation + Delta-G solvation = 9.300495 kcal Electronic energy + Delta-G solvation = -10081.933649 eV Core-core repulsion = 8162.918218 eV Total energy + Delta-G solvation = -1919.015431 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.39744 -35.65428 -32.00413 -30.45251 -27.31817 -24.70678 -22.96534 -22.39244 -19.28197 -16.78295 -15.96887 -15.18683 -14.67678 -14.04615 -13.37014 -13.15194 -12.53536 -12.11402 -11.93820 -11.21470 -11.07466 -10.85781 -10.73435 -10.31093 -10.18076 -9.65404 -9.38586 -8.74658 -8.63400 -6.76198 -5.65190 -2.96323 3.45918 3.50489 3.53536 4.22596 4.55121 5.26448 5.33400 5.52825 5.59795 5.64947 5.71638 5.82486 5.96296 6.22239 6.36862 6.45805 6.63569 6.70591 7.09738 7.34721 7.65829 8.03817 8.13753 9.15540 9.82158 10.71616 11.52454 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.063862 B = 0.012732 C = 0.011924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.339859 B = 2198.599804 C = 2347.655808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.355 6.355 4 C 0.037 3.963 5 C 0.142 3.858 6 N -0.606 5.606 7 C -0.215 4.215 8 H 0.080 0.920 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.912 3.088 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.115 3.885 16 H 0.063 0.937 17 H 0.063 0.937 18 H 0.059 0.941 19 H 0.044 0.956 20 H 0.039 0.961 21 H 0.055 0.945 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.251 0.749 25 H 0.050 0.950 26 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -7.118 5.911 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.274 6.274 4 C -0.022 4.022 5 C 0.017 3.983 6 N -0.333 5.333 7 C -0.343 4.343 8 H 0.097 0.903 9 C -0.207 4.207 10 N -0.571 5.571 11 Si 0.742 3.258 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C -0.011 4.011 16 H 0.082 0.918 17 H 0.082 0.918 18 H 0.078 0.922 19 H 0.062 0.938 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.815 -6.698 5.672 9.218 hybrid contribution 0.234 0.695 -0.467 0.869 sum -2.581 -6.004 5.205 8.354 Atomic orbital electron populations 1.21712 0.94428 1.01384 1.03096 1.22416 0.95139 0.85248 0.99250 1.87985 1.20405 1.24357 1.94615 1.24149 0.81176 0.96485 1.00394 1.22790 0.97046 0.83661 0.94825 1.45831 1.84875 1.02537 1.00011 1.19063 1.42275 0.82304 0.90674 0.90265 1.24762 1.02785 0.97519 0.95652 1.69835 1.57039 1.28845 1.01393 0.86041 0.77242 0.83800 0.78688 1.20500 1.21863 1.21769 1.22799 0.96974 0.90591 0.90713 0.91773 0.91781 0.92209 0.93779 0.94282 0.92770 0.94940 0.90354 0.93874 0.93181 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 37.16 0.38 -1.64 15 2 C 0.06 0.90 6.51 37.16 0.24 1.14 15 3 O -0.35 -7.53 10.37 -35.23 -0.37 -7.89 15 4 C 0.04 0.77 4.48 -25.80 -0.12 0.65 15 5 C 0.14 3.60 7.36 -2.84 -0.02 3.58 15 6 N -0.61 -16.80 3.70 -177.96 -0.66 -17.46 15 7 C -0.22 -6.45 10.70 -15.06 -0.16 -6.61 15 8 H 0.08 2.28 7.83 -52.49 -0.41 1.87 15 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 15 10 N -0.92 -28.76 11.39 55.49 0.63 -28.13 15 11 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 15 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 15 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 15 C 0.12 2.56 8.77 -2.96 -0.03 2.53 15 16 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 17 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 19 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.04 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.05 0.94 7.89 -51.93 -0.41 0.53 15 22 H 0.03 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.08 2.20 7.16 -51.93 -0.37 1.83 15 24 H 0.25 7.52 8.31 -40.82 -0.34 7.18 15 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 15 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 226.26 15.07 3.41 3.41 Total: -1.00 -33.21 226.26 -5.51 -38.72 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: -3.71 Total: -5.97 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 0.20 Total: -0.78 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.03 Total: -45.59 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.37 Total: -7.89 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -33.21 -5.51 -38.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306831279.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.020 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds