Wall clock time and date at job start Mon Mar 30 2020 02:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47111 * 2 1 4 4 C 1.42898 * 114.00309 * 179.97438 * 3 2 1 5 5 C 1.53950 * 113.74250 * 111.25833 * 4 3 2 6 6 N 1.47805 * 86.03824 * 90.88285 * 5 4 3 7 7 C 1.36942 * 134.45487 * 204.64668 * 6 5 4 8 8 H 1.08002 * 119.99602 * 179.86453 * 7 6 5 9 9 C 1.38807 * 120.00184 * 359.86555 * 7 6 5 10 10 N 1.31617 * 119.99858 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00250 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46605 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47103 * 119.99755 * 11 9 7 14 14 H 1.48496 * 109.47077 * 240.00020 * 11 9 7 15 15 C 1.47582 * 91.05413 * 24.54887 * 6 5 4 16 16 H 1.09004 * 109.47125 * 60.00571 * 1 2 3 17 17 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.47201 * 300.00317 * 1 2 3 19 19 H 1.09000 * 109.47659 * 239.99938 * 2 1 3 20 20 H 1.09004 * 109.47125 * 119.99429 * 2 1 3 21 21 H 1.09002 * 112.94238 * 339.66401 * 4 3 2 22 22 H 1.08999 * 113.76704 * 205.15062 * 5 4 3 23 23 H 1.09002 * 113.76463 * 336.53856 * 5 4 3 24 24 H 0.97002 * 120.00155 * 180.02562 * 10 9 7 25 25 H 1.08999 * 113.77186 * 221.15323 * 15 6 5 26 26 H 1.09004 * 113.76624 * 89.74800 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0089 2.0183 -1.3126 6 7 3.8828 3.3495 -0.6826 7 6 3.7531 4.6271 -1.1581 8 1 3.6748 5.4546 -0.4684 9 6 3.7221 4.8587 -2.5264 10 7 3.8170 3.8502 -3.3668 11 14 3.5459 6.6016 -3.1750 12 1 3.4583 7.5478 -2.0338 13 1 4.7259 6.9405 -4.0103 14 1 2.3128 6.7018 -3.9962 15 6 3.9502 2.7488 0.6638 16 1 -0.3633 0.5138 -0.8901 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 1.8934 -0.5138 -0.8899 20 1 1.8933 -0.5138 0.8901 21 1 3.9286 0.5556 0.3498 22 1 5.0394 1.7176 -1.5017 23 1 3.3577 1.8755 -2.1749 24 1 3.7957 4.0121 -4.3230 25 1 3.2522 3.1883 1.3764 26 1 4.9635 2.6632 1.0563 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306831279.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:32 Heat of formation + Delta-G solvation = -14.177045 kcal Electronic energy + Delta-G solvation = -10082.951712 eV Core-core repulsion = 8162.918218 eV Total energy + Delta-G solvation = -1920.033494 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.11756 -37.31542 -34.13124 -31.77869 -29.38860 -26.57214 -24.98304 -23.61486 -21.11009 -18.82985 -17.56599 -17.01702 -16.31725 -15.91360 -15.03314 -14.85725 -14.42131 -13.67666 -13.20167 -13.11121 -12.82187 -12.64251 -12.38498 -12.04411 -11.89270 -11.59003 -11.27374 -10.92402 -10.25163 -8.90696 -7.89019 -5.21782 1.43558 1.46232 1.56308 2.47944 2.79072 3.31526 3.45287 3.83905 4.24935 4.26922 4.40025 4.55506 4.75160 4.78201 4.84523 5.00650 5.09236 5.19290 5.27825 5.36086 5.52302 5.95673 6.57854 6.92867 7.61749 8.57928 9.28543 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.063862 B = 0.012732 C = 0.011924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.339859 B = 2198.599804 C = 2347.655808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.389 6.389 4 C 0.063 3.937 5 C 0.134 3.866 6 N -0.642 5.642 7 C -0.233 4.233 8 H 0.082 0.918 9 C -0.073 4.073 10 N -0.957 5.957 11 Si 0.982 3.018 12 H -0.264 1.264 13 H -0.289 1.289 14 H -0.292 1.292 15 C 0.115 3.885 16 H 0.043 0.957 17 H 0.099 0.901 18 H 0.060 0.940 19 H 0.046 0.954 20 H 0.070 0.930 21 H 0.103 0.897 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.247 0.753 25 H 0.053 0.947 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 -7.590 7.187 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.309 6.309 4 C 0.004 3.996 5 C 0.009 3.991 6 N -0.369 5.369 7 C -0.361 4.361 8 H 0.100 0.900 9 C -0.266 4.266 10 N -0.607 5.607 11 Si 0.810 3.190 12 H -0.189 1.189 13 H -0.216 1.216 14 H -0.219 1.219 15 C -0.010 4.010 16 H 0.062 0.938 17 H 0.117 0.883 18 H 0.079 0.921 19 H 0.064 0.936 20 H 0.088 0.912 21 H 0.120 0.880 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.941 -7.189 6.990 10.450 hybrid contribution 0.251 0.767 -0.811 1.144 sum -2.690 -6.422 6.179 9.309 Atomic orbital electron populations 1.21746 0.93037 1.03396 1.02140 1.22772 0.96377 0.83083 1.00776 1.87949 1.20460 1.27933 1.94542 1.23825 0.81536 0.97712 0.96543 1.22799 0.96657 0.83896 0.95778 1.46266 1.85205 1.02487 1.02936 1.19485 1.41575 0.83831 0.91213 0.90008 1.25678 1.03187 1.01755 0.95955 1.70037 1.58416 1.30950 1.01247 0.84951 0.76795 0.79118 0.78121 1.18872 1.21603 1.21940 1.23041 0.98581 0.90660 0.88717 0.93788 0.88279 0.92095 0.93599 0.91194 0.87998 0.94875 0.94344 0.94391 0.92906 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 10.28 71.98 0.74 -2.93 15 2 C 0.05 1.34 6.51 71.98 0.47 1.81 15 3 O -0.39 -15.95 10.37 -148.98 -1.54 -17.50 15 4 C 0.06 2.48 4.48 31.26 0.14 2.62 15 5 C 0.13 6.83 7.36 86.44 0.64 7.46 15 6 N -0.64 -35.59 3.70 -720.78 -2.67 -38.26 15 7 C -0.23 -14.01 10.70 84.03 0.90 -13.11 15 8 H 0.08 4.71 7.83 -2.91 -0.02 4.68 15 9 C -0.07 -4.45 5.50 84.86 0.47 -3.98 15 10 N -0.96 -61.07 11.39 21.65 0.25 -60.82 15 11 Si 0.98 48.08 29.55 68.60 2.03 50.10 15 12 H -0.26 -12.12 7.11 99.48 0.71 -11.41 15 13 H -0.29 -13.92 7.11 99.48 0.71 -13.22 15 14 H -0.29 -14.26 7.11 99.48 0.71 -13.56 15 15 C 0.11 4.87 8.77 86.49 0.76 5.63 15 16 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 17 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 18 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 19 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.10 3.09 7.89 -2.39 -0.02 3.08 15 22 H 0.03 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.04 2.23 7.16 -2.39 -0.02 2.21 15 24 H 0.25 15.19 8.31 -92.71 -0.77 14.41 15 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -72.21 226.26 3.31 -68.90 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.14 Total: 0.06 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.11 Total: -2.49 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -2.42 Total: -99.08 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -1.54 Total: -17.50 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -72.21 3.31 -68.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306831279.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.727 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds