Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47261 * 2 1 4 4 C 1.50699 * 109.47128 * 239.99385 * 2 1 3 5 5 H 1.08005 * 120.00332 * 245.37978 * 4 2 1 6 6 C 1.37883 * 119.99647 * 65.37710 * 4 2 1 7 7 N 1.31520 * 119.99548 * 185.16356 * 6 4 2 8 8 Si 1.86793 * 120.00165 * 5.17032 * 6 4 2 9 9 H 1.48506 * 109.46822 * 269.99723 * 8 6 4 10 10 H 1.48499 * 109.47255 * 29.99640 * 8 6 4 11 11 H 1.48497 * 109.47174 * 149.99878 * 8 6 4 12 12 N 1.46903 * 109.46980 * 120.00095 * 2 1 3 13 13 C 1.47991 * 110.99976 * 185.64511 * 12 2 1 14 14 C 1.55055 * 103.72236 * 214.83318 * 13 12 2 15 15 C 1.55056 * 101.26238 * 35.62579 * 14 13 12 16 16 N 1.45762 * 111.00280 * 64.86774 * 12 2 1 17 17 H 1.08994 * 109.47059 * 294.95907 * 1 2 3 18 18 H 1.08999 * 109.46994 * 54.96253 * 1 2 3 19 19 H 1.09000 * 109.47213 * 174.95649 * 1 2 3 20 20 H 0.96995 * 120.00502 * 355.00006 * 7 6 4 21 21 H 1.08998 * 110.57695 * 333.38835 * 13 12 2 22 22 H 1.09000 * 110.57803 * 96.27183 * 13 12 2 23 23 H 1.09003 * 111.06247 * 277.63579 * 14 13 12 24 24 H 1.08990 * 111.06649 * 153.62755 * 14 13 12 25 25 H 1.08999 * 110.57085 * 205.81493 * 15 14 13 26 26 H 1.09002 * 110.56923 * 82.93382 * 15 14 13 27 27 H 1.00904 * 111.00384 * 244.46098 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5798 -1.6365 -1.1336 6 6 1.7931 -0.1784 -2.4797 7 7 2.1414 -0.8475 -3.5571 8 14 0.9744 1.4927 -2.6420 9 1 -0.4989 1.3179 -2.7074 10 1 1.3217 2.3303 -1.4660 11 1 1.4495 2.1583 -3.8815 12 7 2.0197 -0.6925 1.1995 13 6 3.4927 -0.5957 1.3036 14 6 3.9077 -1.9544 1.9248 15 6 2.8831 -2.9140 1.2663 16 7 1.6489 -2.1020 1.1768 17 1 -0.3633 0.4336 0.9316 18 1 -0.3633 0.5900 -0.8414 19 1 -0.3633 -1.0237 -0.0903 20 1 2.6311 -1.6806 -3.4735 21 1 3.9393 -0.4735 0.3168 22 1 3.7772 0.2278 1.9585 23 1 3.7916 -1.9413 3.0086 24 1 4.9274 -2.2181 1.6449 25 1 2.7205 -3.7901 1.8941 26 1 3.2196 -3.2104 0.2728 27 1 1.0161 -2.3217 1.9315 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306852282.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = 10.493800 kcal Electronic energy + Delta-G solvation = -10390.499301 eV Core-core repulsion = 8569.254278 eV Total energy + Delta-G solvation = -1821.245023 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.68635 -35.68899 -33.43921 -31.03225 -29.80147 -26.61253 -24.02063 -22.23686 -21.11634 -19.69995 -17.26992 -17.09060 -15.68627 -15.13296 -14.92685 -14.58758 -14.00948 -13.80451 -13.48195 -13.13641 -12.37098 -12.32488 -12.22292 -11.87017 -11.68977 -11.51958 -10.94883 -10.59710 -10.30112 -8.96446 -8.39276 -6.26914 1.44626 1.54172 1.70615 2.51767 2.81428 3.18445 3.66646 3.85249 4.05248 4.37182 4.58735 4.69346 4.79795 4.83054 4.89992 4.92919 5.04752 5.19468 5.22019 5.64781 5.91844 6.08384 6.12894 6.50003 6.66494 6.80472 7.49995 8.73817 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.060779 B = 0.017910 C = 0.016379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.576047 B = 1562.978396 C = 1709.140063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.172 3.828 3 H 0.035 0.965 4 C -0.576 4.576 5 H 0.024 0.976 6 C -0.036 4.036 7 N -0.956 5.956 8 Si 1.094 2.906 9 H -0.267 1.267 10 H -0.251 1.251 11 H -0.297 1.297 12 N -0.363 5.363 13 C 0.017 3.983 14 C -0.139 4.139 15 C 0.036 3.964 16 N -0.538 5.538 17 H 0.057 0.943 18 H 0.037 0.963 19 H 0.043 0.957 20 H 0.245 0.755 21 H 0.030 0.970 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.039 0.961 27 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 0.880 11.611 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.063 3.937 3 H 0.053 0.947 4 C -0.615 4.615 5 H 0.042 0.958 6 C -0.232 4.232 7 N -0.594 5.594 8 Si 0.918 3.082 9 H -0.193 1.193 10 H -0.175 1.175 11 H -0.224 1.224 12 N -0.178 5.178 13 C -0.112 4.112 14 C -0.178 4.178 15 C -0.095 4.095 16 N -0.260 5.260 17 H 0.076 0.924 18 H 0.056 0.944 19 H 0.062 0.938 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.114 0.886 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.058 0.942 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.628 2.162 10.260 10.504 hybrid contribution 1.525 -1.867 0.667 2.501 sum 0.896 0.295 10.927 10.968 Atomic orbital electron populations 1.21812 0.96572 1.00649 0.99378 1.19833 0.93436 0.93168 0.87307 0.94713 1.22648 1.37047 1.08270 0.93577 0.95777 1.27180 0.97299 1.06479 0.92192 1.70946 1.39887 1.16943 1.31629 0.83389 0.76535 0.72126 0.76192 1.19254 1.17532 1.22405 1.66960 1.10607 1.02771 1.37420 1.23395 0.89027 0.99163 0.99606 1.23268 1.00070 0.93428 1.01036 1.23127 0.90259 0.96802 0.99301 1.64474 1.14071 0.97532 1.49913 0.92380 0.94438 0.93758 0.94589 0.95138 0.88602 0.88800 0.89883 0.88414 0.94250 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.81 71.98 0.63 -4.89 15 2 C 0.17 8.24 1.94 44.17 0.09 8.33 15 3 H 0.04 1.70 6.63 -2.39 -0.02 1.68 15 4 C -0.58 -33.17 7.32 25.60 0.19 -32.98 15 5 H 0.02 1.54 6.59 -2.91 -0.02 1.52 15 6 C -0.04 -2.15 5.43 84.66 0.46 -1.69 15 7 N -0.96 -62.23 13.70 21.45 0.29 -61.93 15 8 Si 1.09 52.07 25.29 68.60 1.73 53.80 15 9 H -0.27 -11.87 6.81 99.48 0.68 -11.19 15 10 H -0.25 -10.64 6.36 99.48 0.63 -10.01 15 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 15 12 N -0.36 -15.12 5.62 -489.12 -2.75 -17.87 15 13 C 0.02 0.65 6.57 86.80 0.57 1.22 15 14 C -0.14 -4.15 7.20 32.00 0.23 -3.92 15 15 C 0.04 1.21 7.29 86.80 0.63 1.85 15 16 N -0.54 -21.16 6.06 -181.51 -1.10 -22.26 15 17 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 18 H 0.04 1.62 4.40 -2.39 -0.01 1.61 15 19 H 0.04 2.01 7.86 -2.39 -0.02 1.99 15 20 H 0.25 16.34 8.72 -92.71 -0.81 15.53 15 21 H 0.03 1.38 6.85 -2.39 -0.02 1.36 15 22 H 0.10 3.13 8.14 -2.39 -0.02 3.11 15 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 26 H 0.04 1.62 7.56 -2.39 -0.02 1.60 15 27 H 0.35 11.64 9.07 -204.58 -1.86 9.79 15 Total: -1.00 -67.76 213.87 0.14 -67.62 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -0.84 Total: 12.73 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 2.80 Total: -32.09 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -3.56 Total: -102.06 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 1.73 Total: 53.80 kcal Total: -67.76 0.14 -67.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306852282.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.113 kcal (2) G-P(sol) polarization free energy of solvation -67.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds