Wall clock time and date at job start Mon Mar 30 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46931 * 2 1 4 4 C 1.50695 * 109.47158 * 119.99712 * 2 1 3 5 5 H 1.08003 * 119.99932 * 116.64180 * 4 2 1 6 6 C 1.37877 * 120.00492 * 296.64538 * 4 2 1 7 7 N 1.31516 * 119.99470 * 352.61114 * 6 4 2 8 8 Si 1.86799 * 120.00558 * 172.61815 * 6 4 2 9 9 H 1.48504 * 109.46897 * 265.07097 * 8 6 4 10 10 H 1.48497 * 109.46842 * 25.06968 * 8 6 4 11 11 H 1.48497 * 109.47088 * 145.07337 * 8 6 4 12 12 N 1.46901 * 109.47172 * 240.00116 * 2 1 3 13 13 C 1.47987 * 111.00124 * 65.64347 * 12 2 1 14 14 C 1.55048 * 103.72399 * 214.83636 * 13 12 2 15 15 C 1.55053 * 101.26174 * 35.62975 * 14 13 12 16 16 N 1.45770 * 110.99950 * 304.87175 * 12 2 1 17 17 H 1.09009 * 109.47084 * 177.42084 * 1 2 3 18 18 H 1.09001 * 109.47844 * 297.42201 * 1 2 3 19 19 H 1.09008 * 109.47222 * 57.41964 * 1 2 3 20 20 H 0.97001 * 120.00240 * 180.02562 * 7 6 4 21 21 H 1.09004 * 110.57505 * 333.39498 * 13 12 2 22 22 H 1.09001 * 110.57916 * 96.27672 * 13 12 2 23 23 H 1.09004 * 111.06409 * 277.63972 * 14 13 12 24 24 H 1.08991 * 111.07232 * 153.62490 * 14 13 12 25 25 H 1.09003 * 110.57704 * 205.81169 * 15 14 13 26 26 H 1.09003 * 110.70170 * 82.99310 * 15 14 13 27 27 H 1.00904 * 110.99975 * 0.02562 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6077 -1.6190 1.1323 6 6 1.7573 -0.2003 2.4816 7 7 1.1847 0.9777 2.6001 8 14 2.1981 -1.1823 4.0082 9 1 1.0154 -1.9621 4.4537 10 1 3.3137 -2.1108 3.6944 11 1 2.6155 -0.2547 5.0901 12 7 2.0197 -0.6925 -1.1995 13 6 1.6593 0.0526 -2.4263 14 6 1.3877 -1.0634 -3.4679 15 6 0.7391 -2.1559 -2.5791 16 7 1.4602 -2.0353 -1.2924 17 1 -0.3634 -1.0267 -0.0462 18 1 -0.3635 0.4733 0.9122 19 1 -0.3634 0.5534 -0.8660 20 1 0.9915 1.3368 3.4802 21 1 0.7623 0.6499 -2.2621 22 1 2.4874 0.6838 -2.7484 23 1 2.3174 -1.4201 -3.9113 24 1 0.6948 -0.7216 -4.2367 25 1 0.8927 -3.1439 -3.0132 26 1 -0.3244 -1.9600 -2.4421 27 1 0.8460 -2.2258 -0.5148 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306852284.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:15 Heat of formation + Delta-G solvation = 36.139795 kcal Electronic energy + Delta-G solvation = -10294.167964 eV Core-core repulsion = 8474.035034 eV Total energy + Delta-G solvation = -1820.132930 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.32647 -33.73254 -31.17913 -29.58577 -27.67979 -25.22787 -22.45200 -20.89222 -19.53444 -16.20495 -16.08625 -15.05192 -14.37846 -13.39379 -13.22378 -12.68103 -11.99245 -11.97996 -11.55958 -11.29943 -10.92604 -10.86606 -10.58482 -10.49930 -10.28919 -9.84506 -9.05136 -8.59348 -8.32881 -6.99956 -6.04294 -4.04773 3.32724 3.39696 3.45913 4.42277 4.57478 5.14273 5.19668 5.31967 5.34600 5.74018 5.93945 6.11449 6.21064 6.35557 6.44732 6.47347 6.56479 6.86972 7.21108 7.49679 7.67106 7.94303 8.09250 8.50562 8.58424 9.06187 9.59828 11.05383 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.080382 B = 0.014342 C = 0.013364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.251028 B = 1951.897032 C = 2094.627122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.171 3.829 3 H 0.051 0.949 4 C -0.497 4.497 5 H 0.071 0.929 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.288 1.288 12 N -0.329 5.329 13 C 0.003 3.997 14 C -0.126 4.126 15 C 0.013 3.987 16 N -0.498 5.498 17 H 0.027 0.973 18 H 0.082 0.918 19 H 0.013 0.987 20 H 0.260 0.740 21 H 0.044 0.956 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.032 0.968 27 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 -2.713 -7.234 7.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.069 0.931 4 C -0.536 4.536 5 H 0.089 0.911 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.214 1.214 12 N -0.144 5.144 13 C -0.127 4.127 14 C -0.164 4.164 15 C -0.118 4.118 16 N -0.221 5.221 17 H 0.045 0.955 18 H 0.101 0.899 19 H 0.032 0.968 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.966 -2.943 -7.242 7.877 hybrid contribution -1.753 0.309 1.011 2.047 sum -2.718 -2.634 -6.232 7.291 Atomic orbital electron populations 1.22362 1.01101 0.98534 1.00969 1.20049 0.89675 0.95967 0.88028 0.93076 1.21099 1.33351 1.10059 0.89076 0.91053 1.24977 0.95407 0.94835 0.99178 1.69956 1.43529 1.16407 1.23641 0.86466 0.78703 0.79886 0.82327 1.20877 1.19579 1.21406 1.68599 1.47951 0.96164 1.01688 1.23661 1.00016 0.96742 0.92254 1.22791 1.00750 0.95575 0.97305 1.23370 0.95727 0.99544 0.93159 1.66746 1.36260 1.16272 1.02775 0.95451 0.89899 0.96778 0.93012 0.93744 0.90119 0.90466 0.91583 0.90216 0.94995 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.61 37.16 0.32 -3.73 15 2 C 0.17 4.38 2.17 -68.87 -0.15 4.23 15 3 H 0.05 1.44 8.12 -51.93 -0.42 1.02 15 4 C -0.50 -13.85 7.95 -34.44 -0.27 -14.12 15 5 H 0.07 2.04 7.81 -52.48 -0.41 1.63 15 6 C 0.06 1.59 5.21 -17.82 -0.09 1.50 15 7 N -0.90 -25.73 11.91 55.43 0.66 -25.07 15 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 15 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 12 N -0.33 -7.53 5.63 -105.95 -0.60 -8.13 15 13 C 0.00 0.05 6.61 -2.14 -0.01 0.04 15 14 C -0.13 -1.96 7.20 -24.56 -0.18 -2.14 15 15 C 0.01 0.22 7.70 -2.14 -0.02 0.20 15 16 N -0.50 -10.50 7.45 -8.73 -0.07 -10.57 15 17 H 0.03 0.61 6.30 -51.92 -0.33 0.28 15 18 H 0.08 2.17 6.58 -51.93 -0.34 1.83 15 19 H 0.01 0.30 6.37 -51.92 -0.33 -0.04 15 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 21 H 0.04 0.85 5.95 -51.93 -0.31 0.54 15 22 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 27 H 0.33 7.31 5.94 -174.34 -1.03 6.28 15 LS Contribution 217.38 15.07 3.28 3.28 Total: -1.00 -28.87 217.38 -6.57 -35.44 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.42 Total: 2.50 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.40 Total: -14.02 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.00 Total: -43.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.87 -6.57 -35.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306852284.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.585 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds