Wall clock time and date at job start Mon Mar 30 2020 01:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46931 * 2 1 4 4 C 1.50695 * 109.47158 * 119.99712 * 2 1 3 5 5 H 1.08003 * 119.99932 * 116.64180 * 4 2 1 6 6 C 1.37877 * 120.00492 * 296.64538 * 4 2 1 7 7 N 1.31516 * 119.99470 * 352.61114 * 6 4 2 8 8 Si 1.86799 * 120.00558 * 172.61815 * 6 4 2 9 9 H 1.48504 * 109.46897 * 265.07097 * 8 6 4 10 10 H 1.48497 * 109.46842 * 25.06968 * 8 6 4 11 11 H 1.48497 * 109.47088 * 145.07337 * 8 6 4 12 12 N 1.46901 * 109.47172 * 240.00116 * 2 1 3 13 13 C 1.47987 * 111.00124 * 65.64347 * 12 2 1 14 14 C 1.55048 * 103.72399 * 214.83636 * 13 12 2 15 15 C 1.55053 * 101.26174 * 35.62975 * 14 13 12 16 16 N 1.45770 * 110.99950 * 304.87175 * 12 2 1 17 17 H 1.09009 * 109.47084 * 177.42084 * 1 2 3 18 18 H 1.09001 * 109.47844 * 297.42201 * 1 2 3 19 19 H 1.09008 * 109.47222 * 57.41964 * 1 2 3 20 20 H 0.97001 * 120.00240 * 180.02562 * 7 6 4 21 21 H 1.09004 * 110.57505 * 333.39498 * 13 12 2 22 22 H 1.09001 * 110.57916 * 96.27672 * 13 12 2 23 23 H 1.09004 * 111.06409 * 277.63972 * 14 13 12 24 24 H 1.08991 * 111.07232 * 153.62490 * 14 13 12 25 25 H 1.09003 * 110.57704 * 205.81169 * 15 14 13 26 26 H 1.09003 * 110.70170 * 82.99310 * 15 14 13 27 27 H 1.00904 * 110.99975 * 0.02562 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6077 -1.6190 1.1323 6 6 1.7573 -0.2003 2.4816 7 7 1.1847 0.9777 2.6001 8 14 2.1981 -1.1823 4.0082 9 1 1.0154 -1.9621 4.4537 10 1 3.3137 -2.1108 3.6944 11 1 2.6155 -0.2547 5.0901 12 7 2.0197 -0.6925 -1.1995 13 6 1.6593 0.0526 -2.4263 14 6 1.3877 -1.0634 -3.4679 15 6 0.7391 -2.1559 -2.5791 16 7 1.4602 -2.0353 -1.2924 17 1 -0.3634 -1.0267 -0.0462 18 1 -0.3635 0.4733 0.9122 19 1 -0.3634 0.5534 -0.8660 20 1 0.9915 1.3368 3.4802 21 1 0.7623 0.6499 -2.2621 22 1 2.4874 0.6838 -2.7484 23 1 2.3174 -1.4201 -3.9113 24 1 0.6948 -0.7216 -4.2367 25 1 0.8927 -3.1439 -3.0132 26 1 -0.3244 -1.9600 -2.4421 27 1 0.8460 -2.2258 -0.5148 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306852284.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:14 Heat of formation + Delta-G solvation = 15.885588 kcal Electronic energy + Delta-G solvation = -10295.046252 eV Core-core repulsion = 8474.035034 eV Total energy + Delta-G solvation = -1821.011218 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.94920 -35.64826 -33.06174 -31.09495 -29.42416 -27.31319 -24.14632 -22.27826 -21.36171 -18.20750 -17.84529 -16.55666 -16.27840 -15.19494 -14.78337 -14.43659 -13.87671 -13.65331 -13.15836 -12.93928 -12.77257 -12.45506 -12.36471 -12.17524 -12.08790 -11.70947 -11.08286 -10.54534 -10.13956 -8.68000 -8.16311 -6.23991 1.42716 1.43930 1.56215 2.43206 2.94238 3.17194 3.69401 3.83692 4.01175 4.36635 4.45398 4.58918 4.67637 4.76091 4.85893 5.00079 5.00564 5.13073 5.34870 5.59638 5.68044 5.99336 6.19079 6.65231 6.73440 6.97669 7.45043 8.92678 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.080382 B = 0.014342 C = 0.013364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.251028 B = 1951.897032 C = 2094.627122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.177 3.823 3 H 0.015 0.985 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.270 1.270 11 H -0.285 1.285 12 N -0.351 5.351 13 C -0.004 4.004 14 C -0.113 4.113 15 C 0.009 3.991 16 N -0.510 5.510 17 H 0.036 0.964 18 H 0.055 0.945 19 H 0.031 0.969 20 H 0.262 0.738 21 H 0.040 0.960 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.039 0.961 27 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -3.687 -8.105 9.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.068 3.932 3 H 0.033 0.967 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.195 1.195 11 H -0.210 1.210 12 N -0.166 5.166 13 C -0.134 4.134 14 C -0.151 4.151 15 C -0.121 4.121 16 N -0.232 5.232 17 H 0.055 0.945 18 H 0.074 0.926 19 H 0.050 0.950 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.106 0.894 23 H 0.104 0.896 24 H 0.118 0.882 25 H 0.122 0.878 26 H 0.057 0.943 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.259 -3.919 -8.137 9.119 hybrid contribution -1.648 0.608 1.197 2.126 sum -2.907 -3.311 -6.940 8.221 Atomic orbital electron populations 1.22131 0.99940 0.98991 1.00301 1.19770 0.90413 0.93999 0.88986 0.96737 1.21287 1.33492 1.09784 0.90486 0.92325 1.25731 0.95339 0.95664 1.01974 1.70065 1.44286 1.17584 1.24324 0.85474 0.78576 0.78475 0.78705 1.19958 1.19470 1.21031 1.68473 1.48882 0.97186 1.02037 1.23777 1.00114 0.97691 0.91792 1.22803 1.01927 0.93545 0.96819 1.23553 0.95850 1.01369 0.91338 1.66701 1.37237 1.14962 1.04269 0.94528 0.92601 0.95025 0.92887 0.94194 0.89446 0.89616 0.88238 0.87758 0.94257 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.33 8.61 71.98 0.62 -6.71 15 2 C 0.18 9.19 2.17 44.17 0.10 9.29 15 3 H 0.01 0.86 8.12 -2.38 -0.02 0.84 15 4 C -0.51 -28.86 7.95 25.60 0.20 -28.66 15 5 H 0.06 3.39 7.81 -2.91 -0.02 3.37 15 6 C 0.01 0.65 5.21 84.65 0.44 1.09 15 7 N -0.92 -53.65 11.91 21.45 0.26 -53.40 15 8 Si 0.96 44.40 29.54 68.60 2.03 46.43 15 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 12 N -0.35 -15.89 5.63 -489.13 -2.75 -18.64 15 13 C 0.00 -0.16 6.61 86.79 0.57 0.41 15 14 C -0.11 -3.13 7.20 32.00 0.23 -2.90 15 15 C 0.01 0.28 7.70 86.80 0.67 0.95 15 16 N -0.51 -20.82 7.45 -181.53 -1.35 -22.17 15 17 H 0.04 1.63 6.30 -2.38 -0.02 1.61 15 18 H 0.05 2.95 6.58 -2.39 -0.02 2.94 15 19 H 0.03 1.35 6.37 -2.38 -0.02 1.33 15 20 H 0.26 14.46 8.31 -92.71 -0.77 13.69 15 21 H 0.04 1.47 5.95 -2.38 -0.01 1.46 15 22 H 0.09 2.99 8.14 -2.39 -0.02 2.98 15 23 H 0.09 2.26 8.14 -2.38 -0.02 2.24 15 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 15 25 H 0.10 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 27 H 0.32 14.00 5.94 -204.58 -1.21 12.78 15 Total: -1.00 -61.36 217.38 0.95 -60.41 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.06 Total: 13.89 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 2.83 Total: -26.53 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -3.85 Total: -94.20 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -61.36 0.95 -60.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306852284.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.296 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds