Wall clock time and date at job start Mon Mar 30 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48500 * 109.46635 * 239.99859 * 3 2 1 5 5 H 1.48495 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47176 * 120.00005 * 3 2 1 7 7 C 1.37878 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00129 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99980 * 174.99972 * 10 9 7 12 12 C 1.53117 * 109.35642 * 175.90499 * 11 10 9 13 13 C 1.53228 * 109.08205 * 57.69914 * 12 11 10 14 14 C 1.53120 * 109.12263 * 303.34103 * 13 12 11 15 15 N 1.45356 * 110.99964 * 50.88285 * 10 9 7 16 16 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.46945 * 59.99591 * 9 7 2 18 18 H 1.09005 * 109.46919 * 299.99830 * 9 7 2 19 19 H 1.09002 * 109.49490 * 295.87988 * 11 10 9 20 20 H 1.08996 * 109.49484 * 55.93719 * 11 10 9 21 21 H 1.09001 * 109.53037 * 177.60789 * 12 11 10 22 22 H 1.08996 * 109.53794 * 297.83278 * 12 11 10 23 23 H 1.09005 * 109.52468 * 183.45224 * 13 12 11 24 24 H 1.08998 * 109.52861 * 63.23211 * 13 12 11 25 25 H 1.08996 * 109.49560 * 297.74552 * 14 13 12 26 26 H 1.09003 * 109.49316 * 177.66680 * 14 13 12 27 27 H 1.00897 * 111.00070 * 310.16779 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0018 11 6 1.5089 -4.9037 0.1213 12 6 2.5267 -6.0428 0.0162 13 6 3.5859 -5.8708 1.1099 14 6 4.2328 -4.4901 0.9690 15 7 3.1939 -3.4550 1.0553 16 1 -0.4850 0.8401 0.0004 17 1 0.6246 -2.5571 -0.8896 18 1 0.6239 -2.5567 0.8904 19 1 1.0032 -4.9556 1.0856 20 1 0.7754 -4.9963 -0.6796 21 1 2.0189 -6.9984 0.1470 22 1 3.0057 -6.0144 -0.9625 23 1 4.3481 -6.6428 1.0037 24 1 3.1151 -5.9542 2.0894 25 1 4.7360 -4.4209 0.0046 26 1 4.9583 -4.3449 1.7694 27 1 3.6003 -2.5318 1.0319 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306891446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:53 Heat of formation + Delta-G solvation = 22.127479 kcal Electronic energy + Delta-G solvation = -10063.801666 eV Core-core repulsion = 8243.061117 eV Total energy + Delta-G solvation = -1820.740549 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.67598 -33.52653 -31.75027 -31.21140 -27.15528 -24.49405 -22.84904 -21.26939 -18.98030 -16.34727 -15.95686 -14.50457 -14.42883 -14.07203 -13.09118 -12.94607 -12.61476 -12.36635 -11.79439 -11.26291 -10.87989 -10.74552 -10.41813 -10.31328 -10.16390 -9.79811 -9.16799 -9.06862 -8.40797 -6.54192 -6.04886 -4.07182 3.32735 3.36698 3.39046 4.35102 4.46039 5.30930 5.33808 5.40385 5.44476 5.68356 6.00667 6.03208 6.24842 6.26101 6.42514 6.49630 6.67123 6.73240 7.25826 7.49447 7.67978 7.87426 8.10649 8.53851 8.58305 9.02273 9.56630 11.06279 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.081704 B = 0.012658 C = 0.011306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.616404 B = 2211.595529 C = 2475.859444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.190 3.810 10 N -0.385 5.385 11 C 0.053 3.947 12 C -0.116 4.116 13 C -0.115 4.115 14 C 0.058 3.942 15 N -0.542 5.542 16 H 0.263 0.737 17 H 0.037 0.963 18 H -0.002 1.002 19 H 0.030 0.970 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -7.860 1.023 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.064 3.936 10 N -0.202 5.202 11 C -0.076 4.076 12 C -0.154 4.154 13 C -0.153 4.153 14 C -0.073 4.073 15 N -0.269 5.269 16 H 0.072 0.928 17 H 0.055 0.945 18 H 0.016 0.984 19 H 0.049 0.951 20 H 0.088 0.912 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.116 -8.052 1.036 9.596 hybrid contribution 0.424 1.255 0.002 1.325 sum 5.540 -6.797 1.038 8.830 Atomic orbital electron populations 1.69948 1.06077 1.26975 1.50376 1.24962 0.94879 0.99309 0.95166 0.86543 0.79455 0.82706 0.78609 1.20237 1.21272 1.20158 1.20980 0.92938 0.90314 1.51030 0.92336 1.19812 0.90318 0.87080 0.96414 1.65483 1.15332 1.02871 1.36491 1.22083 0.95323 0.90413 0.99804 1.21592 0.97207 0.97517 0.99034 1.21575 0.98040 0.96457 0.99259 1.21917 0.93465 0.92625 0.99302 1.63451 1.13869 1.07430 1.42117 0.92765 0.94493 0.98420 0.95142 0.91247 0.92448 0.91964 0.92499 0.91969 0.95360 0.91486 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.51 -14.51 8.48 -34.44 -0.29 -14.80 15 8 H 0.06 1.60 6.28 -52.49 -0.33 1.27 15 9 C 0.19 5.12 5.13 -4.97 -0.03 5.10 15 10 N -0.39 -8.88 5.13 -114.98 -0.59 -9.47 15 11 C 0.05 1.04 5.68 -3.76 -0.02 1.02 15 12 C -0.12 -1.83 6.14 -26.55 -0.16 -1.99 15 13 C -0.12 -1.75 6.13 -26.55 -0.16 -1.91 15 14 C 0.06 0.98 6.79 -3.76 -0.03 0.96 15 15 N -0.54 -11.59 6.88 -10.31 -0.07 -11.66 15 16 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 17 H 0.04 1.06 8.14 -51.93 -0.42 0.63 15 18 H 0.00 -0.06 8.13 -51.93 -0.42 -0.48 15 19 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.06 0.99 8.14 -51.93 -0.42 0.56 15 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.36 8.06 6.39 -174.69 -1.12 6.94 15 LS Contribution 222.33 15.07 3.35 3.35 Total: -1.00 -29.88 222.33 -7.19 -37.07 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.81 Total: 0.23 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.79 Total: -10.05 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.08 Total: -47.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.88 -7.19 -37.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306891446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.201 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds