Wall clock time and date at job start Mon Mar 30 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48500 * 109.46635 * 239.99859 * 3 2 1 5 5 H 1.48495 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47176 * 120.00005 * 3 2 1 7 7 C 1.37878 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00129 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99980 * 174.99972 * 10 9 7 12 12 C 1.53117 * 109.35642 * 175.90499 * 11 10 9 13 13 C 1.53228 * 109.08205 * 57.69914 * 12 11 10 14 14 C 1.53120 * 109.12263 * 303.34103 * 13 12 11 15 15 N 1.45356 * 110.99964 * 50.88285 * 10 9 7 16 16 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.46945 * 59.99591 * 9 7 2 18 18 H 1.09005 * 109.46919 * 299.99830 * 9 7 2 19 19 H 1.09002 * 109.49490 * 295.87988 * 11 10 9 20 20 H 1.08996 * 109.49484 * 55.93719 * 11 10 9 21 21 H 1.09001 * 109.53037 * 177.60789 * 12 11 10 22 22 H 1.08996 * 109.53794 * 297.83278 * 12 11 10 23 23 H 1.09005 * 109.52468 * 183.45224 * 13 12 11 24 24 H 1.08998 * 109.52861 * 63.23211 * 13 12 11 25 25 H 1.08996 * 109.49560 * 297.74552 * 14 13 12 26 26 H 1.09003 * 109.49316 * 177.66680 * 14 13 12 27 27 H 1.00897 * 111.00070 * 310.16779 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0018 11 6 1.5089 -4.9037 0.1213 12 6 2.5267 -6.0428 0.0162 13 6 3.5859 -5.8708 1.1099 14 6 4.2328 -4.4901 0.9690 15 7 3.1939 -3.4550 1.0553 16 1 -0.4850 0.8401 0.0004 17 1 0.6246 -2.5571 -0.8896 18 1 0.6239 -2.5567 0.8904 19 1 1.0032 -4.9556 1.0856 20 1 0.7754 -4.9963 -0.6796 21 1 2.0189 -6.9984 0.1470 22 1 3.0057 -6.0144 -0.9625 23 1 4.3481 -6.6428 1.0037 24 1 3.1151 -5.9542 2.0894 25 1 4.7360 -4.4209 0.0046 26 1 4.9583 -4.3449 1.7694 27 1 3.6003 -2.5318 1.0319 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306891446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:53 Heat of formation + Delta-G solvation = 1.117518 kcal Electronic energy + Delta-G solvation = -10064.712726 eV Core-core repulsion = 8243.061117 eV Total energy + Delta-G solvation = -1821.651609 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.26551 -35.45622 -33.60851 -32.73977 -29.13629 -26.24633 -24.36559 -23.17313 -20.41033 -18.50808 -17.66521 -16.33689 -16.21812 -15.45851 -14.89398 -14.43024 -14.17389 -14.04001 -13.60832 -13.15737 -12.72548 -12.58241 -12.10264 -11.86401 -11.70256 -11.35165 -11.12131 -10.83638 -10.53679 -8.32413 -8.22595 -6.34304 1.41711 1.45428 1.53042 2.39274 2.70420 3.12791 4.00508 4.09239 4.14947 4.23089 4.58310 4.71186 4.82785 5.00960 5.06328 5.07788 5.10399 5.28505 5.33068 5.43975 5.58091 5.90228 6.10855 6.58260 6.74822 6.95516 7.35474 8.89008 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.081704 B = 0.012658 C = 0.011306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.616404 B = 2211.595529 C = 2475.859444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.204 3.796 10 N -0.392 5.392 11 C 0.047 3.953 12 C -0.109 4.109 13 C -0.112 4.112 14 C 0.052 3.948 15 N -0.555 5.555 16 H 0.266 0.734 17 H 0.011 0.989 18 H -0.039 1.039 19 H 0.017 0.983 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.028 0.972 26 H 0.092 0.908 27 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 -8.375 1.176 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.077 3.923 10 N -0.208 5.208 11 C -0.082 4.082 12 C -0.146 4.146 13 C -0.150 4.150 14 C -0.077 4.077 15 N -0.280 5.280 16 H 0.074 0.926 17 H 0.029 0.971 18 H -0.021 1.021 19 H 0.036 0.964 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.924 -8.607 1.188 11.110 hybrid contribution -0.136 1.332 -0.034 1.339 sum 6.788 -7.275 1.154 10.017 Atomic orbital electron populations 1.70092 1.07917 1.28130 1.51204 1.25956 0.95770 1.03414 0.94421 0.85347 0.78068 0.77480 0.79169 1.19262 1.20903 1.18964 1.21315 0.93450 0.91023 1.50986 0.91562 1.19455 0.90405 0.88977 0.93428 1.65385 1.14892 1.02860 1.37658 1.22259 0.96575 0.90285 0.99111 1.21588 0.96551 0.96930 0.99573 1.21610 0.98597 0.96133 0.98688 1.22153 0.92892 0.92418 1.00263 1.63485 1.14951 1.08142 1.41459 0.92567 0.97099 1.02107 0.96425 0.91292 0.89403 0.91719 0.88827 0.92265 0.95411 0.88957 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 15 2 C 0.00 0.17 5.46 84.65 0.46 0.63 15 3 Si 0.98 44.23 29.54 68.60 2.03 46.26 15 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 15 7 C -0.53 -30.33 8.48 25.60 0.22 -30.12 15 8 H 0.07 3.62 6.28 -2.91 -0.02 3.60 15 9 C 0.20 11.46 5.13 85.56 0.44 11.90 15 10 N -0.39 -18.23 5.13 -517.69 -2.66 -20.89 15 11 C 0.05 1.82 5.68 86.34 0.49 2.31 15 12 C -0.11 -3.16 6.14 30.71 0.19 -2.97 15 13 C -0.11 -3.03 6.13 30.71 0.19 -2.85 15 14 C 0.05 1.66 6.79 86.34 0.59 2.25 15 15 N -0.55 -23.40 6.88 -186.52 -1.28 -24.68 15 16 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 17 H 0.01 0.66 8.14 -2.39 -0.02 0.64 15 18 H -0.04 -2.41 8.13 -2.38 -0.02 -2.43 15 19 H 0.02 0.72 8.14 -2.39 -0.02 0.70 15 20 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 21 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.09 1.90 8.14 -2.38 -0.02 1.89 15 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.03 0.89 8.14 -2.39 -0.02 0.87 15 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 27 H 0.35 15.61 6.39 -204.88 -1.31 14.30 15 Total: -1.00 -64.74 222.33 0.77 -63.97 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -0.17 Total: 10.95 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 2.57 Total: -18.85 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -3.65 Total: -102.33 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.74 0.77 -63.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306891446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.086 kcal (2) G-P(sol) polarization free energy of solvation -64.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds