Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72524 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.72020 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72280 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.27478 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.27571 * 7 2 1 10 10 C 1.34777 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 7 13 13 H 1.09007 * 112.67940 * 295.33760 * 12 10 9 14 14 C 1.53367 * 113.39216 * 65.84748 * 12 10 9 15 15 C 1.53504 * 81.21242 * 88.43798 * 14 12 10 16 16 O 1.43344 * 113.39452 * 164.82126 * 12 10 9 17 17 H 0.96991 * 120.00673 * 179.97438 * 1 2 3 18 18 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 19 19 H 1.08992 * 114.56841 * 201.50799 * 14 12 10 20 20 H 1.08997 * 114.56444 * 335.32238 * 14 12 10 21 21 H 1.09001 * 113.39086 * 271.58919 * 15 14 12 22 22 H 1.09002 * 113.44191 * 141.38575 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1071 1.6933 -1.2091 5 1 1.2833 2.7464 -0.0068 6 1 3.0970 1.6992 1.2159 7 6 2.0088 -1.2034 0.0059 8 1 3.0888 -1.2035 0.0103 9 7 1.3232 -2.3907 0.0059 10 6 1.9970 -3.5579 0.0111 11 8 3.2099 -3.5580 0.0161 12 6 1.2434 -4.8630 0.0105 13 1 0.6567 -5.0100 0.9174 14 6 0.4455 -5.1049 -1.2767 15 6 1.7816 -5.7249 -1.7090 16 8 2.0598 -5.9915 -0.3283 17 1 -0.4851 -0.8399 -0.0004 18 1 0.3532 -2.3906 0.0015 19 1 -0.3729 -5.8175 -1.1754 20 1 0.1701 -4.1987 -1.8161 21 1 2.4672 -5.0060 -2.1576 22 1 1.6668 -6.6274 -2.3093 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307217215.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -48.394771 kcal Electronic energy + Delta-G solvation = -9905.182787 eV Core-core repulsion = 7847.832407 eV Total energy + Delta-G solvation = -2057.350380 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.70713 -37.49828 -34.33145 -31.28258 -29.58752 -26.76559 -24.36024 -21.78358 -19.21473 -18.02318 -16.80317 -16.24397 -15.49665 -14.76749 -14.31571 -13.73415 -13.20724 -12.56612 -12.36168 -11.30035 -11.04990 -10.79777 -10.54057 -10.23245 -10.01323 -9.88989 -9.61139 -8.30191 -8.11618 -6.82477 -3.96034 3.25178 3.32485 3.52800 3.64786 4.10171 4.28564 4.49138 4.65681 5.19705 5.26449 5.49842 5.68106 5.81698 5.92560 6.15997 6.17325 6.32775 7.71921 8.01124 8.50933 8.70807 9.38388 9.77363 10.60668 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.093789 B = 0.012708 C = 0.011845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.469670 B = 2202.741280 C = 2363.341777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.006 4.006 3 Si 1.092 2.908 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.386 4.386 8 H 0.100 0.900 9 N -0.564 5.564 10 C 0.431 3.569 11 O -0.575 6.575 12 C 0.051 3.949 13 H 0.107 0.893 14 C -0.182 4.182 15 C 0.032 3.968 16 O -0.348 6.348 17 H 0.262 0.738 18 H 0.377 0.623 19 H 0.100 0.900 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 -5.420 -2.554 6.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.209 4.209 3 Si 0.918 3.082 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.515 4.515 8 H 0.118 0.882 9 N -0.202 5.202 10 C 0.216 3.784 11 O -0.459 6.459 12 C -0.011 4.011 13 H 0.125 0.875 14 C -0.220 4.220 15 C -0.045 4.045 16 O -0.265 6.265 17 H 0.073 0.927 18 H 0.211 0.789 19 H 0.118 0.882 20 H 0.103 0.897 21 H 0.101 0.899 22 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.451 -3.956 -2.398 4.849 hybrid contribution -0.501 -1.685 -0.022 1.758 sum -1.952 -5.641 -2.421 6.441 Atomic orbital electron populations 1.70902 1.06526 1.29487 1.46605 1.26566 0.96506 1.02678 0.95174 0.83122 0.74456 0.73474 0.77179 1.20917 1.20318 1.20901 1.20585 0.94806 0.83746 1.52322 0.88191 1.41884 1.08282 1.05332 1.64749 1.19826 0.88462 0.84528 0.85572 1.90556 1.13510 1.86749 1.55106 1.22853 0.90736 0.87778 0.99775 0.87521 1.24362 0.98244 1.02574 0.96817 1.23586 0.94739 1.00291 0.85925 1.89869 1.73724 1.43095 1.19782 0.92678 0.78941 0.88162 0.89716 0.89942 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.68 55.50 0.76 -24.02 14 2 C -0.01 -0.17 5.50 -17.47 -0.10 -0.27 14 3 Si 1.09 24.02 29.92 -169.99 -5.09 18.93 14 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 14 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 14 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 14 7 C -0.39 -10.86 9.68 -14.93 -0.14 -11.00 14 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 14 9 N -0.56 -14.27 5.28 -10.96 -0.06 -14.33 14 10 C 0.43 10.65 6.60 -10.98 -0.07 10.57 14 11 O -0.58 -16.74 16.33 -10.94 -0.18 -16.92 14 12 C 0.05 0.98 4.90 -40.46 -0.20 0.78 14 13 H 0.11 1.80 8.14 -51.92 -0.42 1.37 14 14 C -0.18 -2.76 8.26 -26.28 -0.22 -2.98 14 15 C 0.03 0.52 8.40 24.65 0.21 0.73 14 16 O -0.35 -7.00 12.30 -51.72 -0.64 -7.63 14 17 H 0.26 6.93 6.77 -40.82 -0.28 6.66 14 18 H 0.38 8.69 6.73 -40.82 -0.27 8.41 14 19 H 0.10 1.21 8.14 -51.93 -0.42 0.78 14 20 H 0.08 1.30 8.11 -51.93 -0.42 0.88 14 21 H 0.08 1.51 7.84 -51.93 -0.41 1.11 14 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 14 LS Contribution 203.21 15.07 3.06 3.06 Total: -1.00 -32.97 203.21 -4.48 -37.45 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -1.82 Total: 5.63 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.52 Total: -2.16 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.70 Total: -38.36 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.81 Total: -24.55 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.09 Total: 18.93 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -32.97 -4.48 -37.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307217215.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.947 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds