Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46967 * 90.00540 * 3 2 1 5 5 H 1.48505 * 109.47170 * 210.00012 * 3 2 1 6 6 H 1.48498 * 109.47513 * 330.00626 * 3 2 1 7 7 C 1.38954 * 119.99693 * 179.73210 * 2 1 3 8 8 H 1.08001 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99538 * 180.02562 * 10 9 7 13 13 H 1.08995 * 112.68900 * 64.66571 * 12 10 9 14 14 C 1.53370 * 113.39306 * 294.14449 * 12 10 9 15 15 C 1.53452 * 81.23565 * 218.63313 * 14 12 10 16 16 O 1.43355 * 88.46144 * 26.45213 * 15 14 12 17 17 H 0.97005 * 120.00032 * 179.97438 * 1 2 3 18 18 H 0.96991 * 119.99873 * 359.97438 * 9 7 2 19 19 H 1.09000 * 114.56425 * 331.71977 * 14 12 10 20 20 H 1.08999 * 114.56252 * 105.52230 * 14 12 10 21 21 H 1.08996 * 113.34921 * 271.55444 * 15 14 12 22 22 H 1.08998 * 113.46195 * 141.36616 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 1.4001 5 1 3.5457 1.4401 -0.7001 6 1 1.4456 2.6527 -0.6999 7 6 2.0088 -1.2034 0.0056 8 1 3.0889 -1.2034 0.0060 9 7 1.3233 -2.3907 0.0117 10 6 1.9972 -3.5579 0.0177 11 8 3.2101 -3.5579 0.0172 12 6 1.2436 -4.8629 0.0238 13 1 0.6611 -5.0163 -0.8846 14 6 0.4400 -5.0960 1.3091 15 6 0.9337 -6.5306 1.0786 16 8 2.0586 -5.9890 0.3741 17 1 -0.4850 -0.8401 -0.0004 18 1 0.3534 -2.3906 0.0125 19 1 0.8514 -4.6119 2.1948 20 1 -0.6365 -4.9638 1.2007 21 1 0.2696 -7.1195 0.4460 22 1 1.2072 -7.0484 1.9979 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307217216.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = -48.351873 kcal Electronic energy + Delta-G solvation = -9816.254248 eV Core-core repulsion = 7758.905728 eV Total energy + Delta-G solvation = -2057.348520 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.57507 -37.65016 -34.30652 -31.23905 -29.63330 -26.98907 -24.24195 -21.30542 -19.70356 -17.98614 -17.01667 -16.24300 -15.55176 -14.36310 -14.23530 -13.71802 -13.51656 -12.46298 -12.32079 -11.30332 -11.18032 -10.93140 -10.76558 -10.22408 -9.89774 -9.69257 -9.56673 -8.34773 -8.07814 -6.79206 -3.92515 3.28429 3.34207 3.53953 3.71295 3.95553 4.29911 4.42177 4.84378 5.07993 5.22778 5.41019 5.46323 5.75345 5.86498 5.98288 6.28792 6.32149 7.76251 8.04789 8.55078 8.75063 9.42324 9.81894 10.64197 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.100800 B = 0.012095 C = 0.011140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.710907 B = 2314.417451 C = 2512.850944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.008 4.008 3 Si 1.095 2.905 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.384 4.384 8 H 0.100 0.900 9 N -0.567 5.567 10 C 0.441 3.559 11 O -0.574 6.574 12 C 0.049 3.951 13 H 0.101 0.899 14 C -0.177 4.177 15 C 0.024 3.976 16 O -0.342 6.342 17 H 0.262 0.738 18 H 0.377 0.623 19 H 0.101 0.899 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -6.633 1.608 7.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.210 4.210 3 Si 0.920 3.080 4 H -0.210 1.210 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.513 4.513 8 H 0.118 0.882 9 N -0.206 5.206 10 C 0.227 3.773 11 O -0.457 6.457 12 C -0.012 4.012 13 H 0.119 0.881 14 C -0.214 4.214 15 C -0.053 4.053 16 O -0.259 6.259 17 H 0.073 0.927 18 H 0.210 0.790 19 H 0.120 0.880 20 H 0.102 0.898 21 H 0.096 0.904 22 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.441 -5.049 1.545 5.817 hybrid contribution -0.601 -1.761 0.013 1.861 sum -3.042 -6.810 1.559 7.620 Atomic orbital electron populations 1.70878 1.06513 1.29440 1.46987 1.26550 0.96531 1.02636 0.95306 0.83081 0.74405 0.73269 0.77211 1.21039 1.20863 1.20567 1.20609 0.94798 0.83700 1.52155 0.88190 1.41824 1.08215 1.05216 1.65304 1.19585 0.88330 0.84260 0.85163 1.90551 1.13670 1.86796 1.54700 1.23058 0.91178 0.88672 0.98324 0.88126 1.24332 1.01346 0.96801 0.98968 1.23567 0.88649 0.95956 0.97169 1.90013 1.28245 1.35023 1.72655 0.92705 0.78997 0.88022 0.89820 0.90412 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 13.68 55.50 0.76 -24.32 14 2 C -0.01 -0.21 5.50 -17.47 -0.10 -0.30 14 3 Si 1.09 24.36 29.92 -169.99 -5.09 19.28 14 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 6 H -0.28 -6.12 7.11 56.52 0.40 -5.71 14 7 C -0.38 -10.96 9.68 -14.93 -0.14 -11.10 14 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 14 9 N -0.57 -14.57 5.28 -10.96 -0.06 -14.63 14 10 C 0.44 11.16 7.33 -10.99 -0.08 11.08 14 11 O -0.57 -17.22 16.35 -10.94 -0.18 -17.39 14 12 C 0.05 0.95 4.50 -40.43 -0.18 0.76 14 13 H 0.10 1.65 8.14 -51.93 -0.42 1.22 14 14 C -0.18 -2.66 8.19 -26.31 -0.22 -2.87 14 15 C 0.02 0.33 8.74 24.65 0.22 0.55 14 16 O -0.34 -6.84 12.27 -51.72 -0.63 -7.48 14 17 H 0.26 6.98 6.78 -40.82 -0.28 6.71 14 18 H 0.38 8.77 6.73 -40.82 -0.27 8.49 14 19 H 0.10 1.65 8.12 -51.93 -0.42 1.23 14 20 H 0.08 1.01 8.14 -51.93 -0.42 0.59 14 21 H 0.08 0.85 8.14 -51.93 -0.42 0.43 14 22 H 0.09 1.02 8.14 -51.93 -0.42 0.60 14 LS Contribution 204.12 15.07 3.08 3.08 Total: -1.00 -34.09 204.12 -4.46 -38.55 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -1.84 Total: 4.81 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.50 Total: -1.89 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.70 Total: -38.95 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.81 Total: -24.87 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.09 Total: 19.28 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -34.09 -4.46 -38.55 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307217216.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.800 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds