Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46967 * 90.00540 * 3 2 1 5 5 H 1.48505 * 109.47170 * 210.00012 * 3 2 1 6 6 H 1.48498 * 109.47513 * 330.00626 * 3 2 1 7 7 C 1.38954 * 119.99693 * 179.73210 * 2 1 3 8 8 H 1.08001 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99538 * 180.02562 * 10 9 7 13 13 H 1.08995 * 112.68900 * 64.66571 * 12 10 9 14 14 C 1.53370 * 113.39306 * 294.14449 * 12 10 9 15 15 C 1.53452 * 81.23565 * 218.63313 * 14 12 10 16 16 O 1.43355 * 88.46144 * 26.45213 * 15 14 12 17 17 H 0.97005 * 120.00032 * 179.97438 * 1 2 3 18 18 H 0.96991 * 119.99873 * 359.97438 * 9 7 2 19 19 H 1.09000 * 114.56425 * 331.71977 * 14 12 10 20 20 H 1.08999 * 114.56252 * 105.52230 * 14 12 10 21 21 H 1.08996 * 113.34921 * 271.55444 * 15 14 12 22 22 H 1.08998 * 113.46195 * 141.36616 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 1.4001 5 1 3.5457 1.4401 -0.7001 6 1 1.4456 2.6527 -0.6999 7 6 2.0088 -1.2034 0.0056 8 1 3.0889 -1.2034 0.0060 9 7 1.3233 -2.3907 0.0117 10 6 1.9972 -3.5579 0.0177 11 8 3.2101 -3.5579 0.0172 12 6 1.2436 -4.8629 0.0238 13 1 0.6611 -5.0163 -0.8846 14 6 0.4400 -5.0960 1.3091 15 6 0.9337 -6.5306 1.0786 16 8 2.0586 -5.9890 0.3741 17 1 -0.4850 -0.8401 -0.0004 18 1 0.3534 -2.3906 0.0125 19 1 0.8514 -4.6119 2.1948 20 1 -0.6365 -4.9638 1.2007 21 1 0.2696 -7.1195 0.4460 22 1 1.2072 -7.0484 1.9979 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307217216.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = -74.449281 kcal Electronic energy + Delta-G solvation = -9817.385917 eV Core-core repulsion = 7758.905728 eV Total energy + Delta-G solvation = -2058.480188 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.01448 -39.62003 -36.44820 -33.30570 -31.05053 -28.54509 -26.21085 -22.75725 -21.39906 -20.09753 -18.76351 -17.61360 -17.17020 -16.22656 -15.95875 -15.50477 -15.39416 -13.93423 -13.74115 -13.43542 -12.89892 -12.58054 -11.96986 -11.93975 -11.89270 -11.61108 -11.00313 -10.31700 -10.18813 -8.99306 -6.14317 1.46295 1.53764 1.82010 1.87788 2.31239 2.61383 3.04842 3.15732 3.25735 3.86756 4.03537 4.26545 4.40295 4.70913 4.79434 4.94581 5.13610 5.56231 5.90104 6.48338 6.64102 7.32927 7.80354 8.48460 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.100800 B = 0.012095 C = 0.011140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.710907 B = 2314.417451 C = 2512.850944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.034 4.034 3 Si 1.136 2.864 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.418 4.418 8 H 0.070 0.930 9 N -0.568 5.568 10 C 0.431 3.569 11 O -0.632 6.632 12 C 0.048 3.952 13 H 0.136 0.864 14 C -0.165 4.165 15 C 0.030 3.970 16 O -0.386 6.386 17 H 0.262 0.738 18 H 0.389 0.611 19 H 0.082 0.918 20 H 0.122 0.878 21 H 0.117 0.883 22 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -7.079 1.815 8.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.234 4.234 3 Si 0.955 3.045 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.088 0.912 9 N -0.207 5.207 10 C 0.219 3.781 11 O -0.519 6.519 12 C -0.013 4.013 13 H 0.154 0.846 14 C -0.202 4.202 15 C -0.046 4.046 16 O -0.305 6.305 17 H 0.073 0.927 18 H 0.224 0.776 19 H 0.101 0.899 20 H 0.140 0.860 21 H 0.135 0.865 22 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.976 -5.522 1.763 7.030 hybrid contribution -0.164 -1.690 -0.045 1.699 sum -4.140 -7.212 1.719 8.492 Atomic orbital electron populations 1.70941 1.06844 1.29731 1.47159 1.27872 0.96683 1.05157 0.93660 0.82598 0.73607 0.70072 0.78195 1.19402 1.20502 1.19287 1.20584 0.93949 0.85594 1.54550 0.91187 1.41809 1.08747 1.04950 1.65232 1.20852 0.88118 0.86215 0.82909 1.90504 1.16526 1.88004 1.56870 1.23236 0.90993 0.85053 1.02041 0.84647 1.24293 1.02919 0.97390 0.95641 1.23905 0.87043 0.95465 0.98185 1.89993 1.31202 1.35534 1.73752 0.92687 0.77578 0.89922 0.85958 0.86497 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.80 13.68 21.66 0.30 -49.50 14 2 C -0.03 -1.87 5.50 84.93 0.47 -1.40 14 3 Si 1.14 48.40 29.92 68.60 2.05 50.45 14 4 H -0.27 -10.77 7.11 99.48 0.71 -10.07 14 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 14 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 14 7 C -0.42 -24.34 9.68 84.04 0.81 -23.52 14 8 H 0.07 4.44 7.16 -2.91 -0.02 4.42 14 9 N -0.57 -29.48 5.28 -306.98 -1.62 -31.10 14 10 C 0.43 22.08 7.33 87.66 0.64 22.73 14 11 O -0.63 -39.28 16.35 12.69 0.21 -39.07 14 12 C 0.05 1.76 4.50 21.72 0.10 1.85 14 13 H 0.14 4.01 8.14 -2.39 -0.02 3.99 14 14 C -0.16 -4.48 8.19 30.87 0.25 -4.22 14 15 C 0.03 0.72 8.74 63.88 0.56 1.28 14 16 O -0.39 -14.92 12.27 -133.22 -1.63 -16.55 14 17 H 0.26 13.77 6.78 -92.70 -0.63 13.14 14 18 H 0.39 17.93 6.73 -92.72 -0.62 17.31 14 19 H 0.08 2.57 8.12 -2.39 -0.02 2.55 14 20 H 0.12 2.39 8.14 -2.39 -0.02 2.37 14 21 H 0.12 1.94 8.14 -2.39 -0.02 1.92 14 22 H 0.10 2.11 8.14 -2.39 -0.02 2.09 14 Total: -1.00 -75.35 204.12 2.88 -72.47 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.75 Total: 16.60 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 2.83 Total: -3.29 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.33 Total: -80.60 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -1.43 Total: -55.62 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.05 Total: 50.45 kcal Total: -75.35 2.88 -72.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307217216.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.980 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds