Wall clock time and date at job start Mon Mar 30 2020 01:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 120.00234 * 2 1 4 4 H 1.07996 * 120.00223 * 326.20234 * 3 2 1 5 5 C 1.38811 * 120.00118 * 146.19191 * 3 2 1 6 6 N 1.31620 * 119.99969 * 157.56048 * 5 3 2 7 7 Si 1.86807 * 120.00273 * 337.56942 * 5 3 2 8 8 H 1.48497 * 109.46949 * 88.02928 * 7 5 3 9 9 H 1.48495 * 109.47007 * 208.03641 * 7 5 3 10 10 H 1.48497 * 109.46534 * 328.03221 * 7 5 3 11 11 C 1.46500 * 120.00186 * 179.97438 * 2 1 3 12 12 C 1.53786 * 113.60930 * 60.00203 * 11 2 1 13 13 C 1.53786 * 87.08039 * 219.93496 * 12 11 2 14 14 N 1.46896 * 113.61275 * 139.97966 * 13 12 11 15 15 C 1.53785 * 87.17113 * 25.39218 * 13 12 11 16 16 H 1.09007 * 109.47322 * 272.86901 * 1 2 3 17 17 H 1.09007 * 109.46691 * 32.86592 * 1 2 3 18 18 H 1.08994 * 109.47112 * 152.86379 * 1 2 3 19 19 H 0.96998 * 120.00059 * 180.02562 * 6 5 3 20 20 H 1.08993 * 112.85343 * 191.19312 * 11 2 1 21 21 H 1.09005 * 113.61548 * 105.38668 * 12 11 2 22 22 H 1.09002 * 113.61451 * 334.48599 * 12 11 2 23 23 H 1.08992 * 113.61230 * 270.79967 * 13 12 11 24 24 H 1.00894 * 111.00037 * 181.52974 * 14 13 12 25 25 H 1.00904 * 111.00399 * 305.48866 * 14 13 12 26 26 H 1.08996 * 113.61380 * 89.15502 * 15 13 12 27 27 H 1.08994 * 113.61000 * 220.06278 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7467 2.0422 -0.5202 5 6 3.3618 1.2875 0.6689 6 7 4.2232 2.2237 0.3313 7 14 3.7705 0.0955 2.0479 8 1 4.4204 -1.1133 1.4809 9 1 4.6939 0.7492 3.0097 10 1 2.5217 -0.2968 2.7493 11 6 2.1975 -1.2687 0.0006 12 6 1.8953 -2.1549 -1.2194 13 6 1.9151 -3.3529 -0.2553 14 7 0.8719 -4.3491 -0.5332 15 6 1.5404 -2.3635 0.8607 16 1 -0.3634 0.0514 1.0264 17 1 -0.3633 0.8633 -0.5577 18 1 -0.3633 -0.9145 -0.4687 19 1 5.0704 2.2944 0.7985 20 1 3.2624 -1.1425 0.1955 21 1 2.6991 -2.1735 -1.9555 22 1 0.9176 -1.9679 -1.6635 23 1 2.9025 -3.7974 -0.1315 24 1 0.9049 -5.1035 0.1359 25 1 -0.0416 -3.9209 -0.5506 26 1 0.4655 -2.2336 0.9863 27 1 2.0581 -2.5502 1.8016 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307379361.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:38 Heat of formation + Delta-G solvation = 45.687551 kcal Electronic energy + Delta-G solvation = -10314.508864 eV Core-core repulsion = 8494.789956 eV Total energy + Delta-G solvation = -1819.718908 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.89188 -34.53179 -31.68594 -30.57909 -26.40264 -25.09947 -23.62349 -20.92388 -19.00186 -17.05552 -15.77083 -15.29303 -14.70666 -13.72187 -13.28230 -13.20162 -12.67612 -12.00853 -11.77291 -11.56809 -11.33549 -10.74463 -10.65411 -10.24757 -10.14231 -9.63808 -9.47473 -8.53358 -8.37610 -6.84702 -5.98539 -3.36738 3.28098 3.45888 3.51929 4.51567 4.72519 5.02865 5.20991 5.28824 5.38557 5.50110 5.73600 6.17011 6.18421 6.23740 6.33539 6.52130 6.60834 6.68132 6.69947 6.98203 7.34509 7.63538 8.03503 8.35764 8.98281 9.71702 10.11313 11.17358 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.056655 B = 0.018900 C = 0.016559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.099759 B = 1481.154237 C = 1690.508265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.596 5.596 3 C -0.269 4.269 4 H 0.082 0.918 5 C 0.030 3.970 6 N -0.903 5.903 7 Si 0.878 3.122 8 H -0.284 1.284 9 H -0.302 1.302 10 H -0.269 1.269 11 C 0.148 3.852 12 C -0.150 4.150 13 C 0.067 3.933 14 N -0.838 5.838 15 C -0.202 4.202 16 H 0.007 0.993 17 H 0.041 0.959 18 H 0.032 0.968 19 H 0.263 0.737 20 H 0.098 0.902 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.334 0.666 25 H 0.339 0.661 26 H 0.080 0.920 27 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -9.985 0.842 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.317 5.317 3 C -0.398 4.398 4 H 0.100 0.900 5 C -0.170 4.170 6 N -0.544 5.544 7 Si 0.708 3.292 8 H -0.212 1.212 9 H -0.230 1.230 10 H -0.194 1.194 11 C 0.039 3.961 12 C -0.190 4.190 13 C -0.045 4.045 14 N -0.366 5.366 15 C -0.243 4.243 16 H 0.025 0.975 17 H 0.060 0.940 18 H 0.051 0.949 19 H 0.073 0.927 20 H 0.116 0.884 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.114 0.886 24 H 0.145 0.855 25 H 0.151 0.849 26 H 0.098 0.902 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.743 -9.955 0.167 11.028 hybrid contribution -0.016 -0.327 1.864 1.893 sum -4.759 -10.282 2.031 11.510 Atomic orbital electron populations 1.21016 0.84678 0.98763 0.97647 1.44054 1.00679 1.01716 1.85265 1.18906 1.03040 0.89994 1.27846 0.90016 1.25409 0.96770 0.96609 0.98182 1.69868 1.07793 1.35623 1.41158 0.87022 0.77877 0.80234 0.84084 1.21200 1.23016 1.19429 1.22055 0.96824 0.84111 0.93063 1.23713 1.01916 0.94899 0.98521 1.22748 0.95288 0.90273 0.96217 1.58758 1.07588 1.13596 1.56616 1.24502 1.01482 0.99796 0.98541 0.97481 0.94050 0.94916 0.92697 0.88418 0.91874 0.90334 0.88650 0.85454 0.84881 0.90177 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.53 9.37 59.84 0.56 3.09 15 2 N -0.60 -14.58 2.76 -172.45 -0.48 -15.06 15 3 C -0.27 -7.74 9.97 -15.06 -0.15 -7.89 15 4 H 0.08 2.51 8.06 -52.49 -0.42 2.08 15 5 C 0.03 0.89 5.24 -17.43 -0.09 0.79 15 6 N -0.90 -27.96 13.97 55.49 0.78 -27.19 15 7 Si 0.88 22.54 24.44 -169.99 -4.15 18.38 15 8 H -0.28 -6.95 6.30 56.52 0.36 -6.59 15 9 H -0.30 -7.86 7.11 56.52 0.40 -7.46 15 10 H -0.27 -6.86 7.11 56.52 0.40 -6.45 15 11 C 0.15 3.27 2.56 -67.02 -0.17 3.10 15 12 C -0.15 -2.81 7.39 -25.91 -0.19 -3.00 15 13 C 0.07 1.09 5.00 -66.90 -0.33 0.75 15 14 N -0.84 -11.34 9.63 -3.98 -0.04 -11.38 15 15 C -0.20 -3.71 6.85 -25.82 -0.18 -3.88 15 16 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 15 17 H 0.04 0.83 8.06 -51.93 -0.42 0.41 15 18 H 0.03 0.57 6.23 -51.93 -0.32 0.25 15 19 H 0.26 7.71 8.31 -40.82 -0.34 7.37 15 20 H 0.10 2.40 4.03 -51.93 -0.21 2.19 15 21 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.08 1.44 6.96 -51.93 -0.36 1.08 15 23 H 0.10 1.51 8.14 -51.93 -0.42 1.09 15 24 H 0.33 3.81 9.08 -39.30 -0.36 3.45 15 25 H 0.34 4.29 8.87 -39.29 -0.35 3.94 15 26 H 0.08 1.40 6.60 -51.93 -0.34 1.06 15 27 H 0.05 1.03 7.72 -51.93 -0.40 0.63 15 LS Contribution 216.03 15.07 3.26 3.26 Total: -1.00 -30.68 216.03 -4.83 -35.51 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.63 Total: 3.52 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.56 Total: -7.04 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.26 Total: -53.63 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.15 Total: 18.38 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -30.68 -4.83 -35.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307379361.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.194 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds