Wall clock time and date at job start Mon Mar 30 2020 01:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 120.00234 * 2 1 4 4 H 1.07996 * 120.00223 * 326.20234 * 3 2 1 5 5 C 1.38811 * 120.00118 * 146.19191 * 3 2 1 6 6 N 1.31620 * 119.99969 * 157.56048 * 5 3 2 7 7 Si 1.86807 * 120.00273 * 337.56942 * 5 3 2 8 8 H 1.48497 * 109.46949 * 88.02928 * 7 5 3 9 9 H 1.48495 * 109.47007 * 208.03641 * 7 5 3 10 10 H 1.48497 * 109.46534 * 328.03221 * 7 5 3 11 11 C 1.46500 * 120.00186 * 179.97438 * 2 1 3 12 12 C 1.53786 * 113.60930 * 60.00203 * 11 2 1 13 13 C 1.53786 * 87.08039 * 219.93496 * 12 11 2 14 14 N 1.46896 * 113.61275 * 139.97966 * 13 12 11 15 15 C 1.53785 * 87.17113 * 25.39218 * 13 12 11 16 16 H 1.09007 * 109.47322 * 272.86901 * 1 2 3 17 17 H 1.09007 * 109.46691 * 32.86592 * 1 2 3 18 18 H 1.08994 * 109.47112 * 152.86379 * 1 2 3 19 19 H 0.96998 * 120.00059 * 180.02562 * 6 5 3 20 20 H 1.08993 * 112.85343 * 191.19312 * 11 2 1 21 21 H 1.09005 * 113.61548 * 105.38668 * 12 11 2 22 22 H 1.09002 * 113.61451 * 334.48599 * 12 11 2 23 23 H 1.08992 * 113.61230 * 270.79967 * 13 12 11 24 24 H 1.00894 * 111.00037 * 181.52974 * 14 13 12 25 25 H 1.00904 * 111.00399 * 305.48866 * 14 13 12 26 26 H 1.08996 * 113.61380 * 89.15502 * 15 13 12 27 27 H 1.08994 * 113.61000 * 220.06278 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7467 2.0422 -0.5202 5 6 3.3618 1.2875 0.6689 6 7 4.2232 2.2237 0.3313 7 14 3.7705 0.0955 2.0479 8 1 4.4204 -1.1133 1.4809 9 1 4.6939 0.7492 3.0097 10 1 2.5217 -0.2968 2.7493 11 6 2.1975 -1.2687 0.0006 12 6 1.8953 -2.1549 -1.2194 13 6 1.9151 -3.3529 -0.2553 14 7 0.8719 -4.3491 -0.5332 15 6 1.5404 -2.3635 0.8607 16 1 -0.3634 0.0514 1.0264 17 1 -0.3633 0.8633 -0.5577 18 1 -0.3633 -0.9145 -0.4687 19 1 5.0704 2.2944 0.7985 20 1 3.2624 -1.1425 0.1955 21 1 2.6991 -2.1735 -1.9555 22 1 0.9176 -1.9679 -1.6635 23 1 2.9025 -3.7974 -0.1315 24 1 0.9049 -5.1035 0.1359 25 1 -0.0416 -3.9209 -0.5506 26 1 0.4655 -2.2336 0.9863 27 1 2.0581 -2.5502 1.8016 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307379361.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:38 Heat of formation + Delta-G solvation = 21.960323 kcal Electronic energy + Delta-G solvation = -10315.537754 eV Core-core repulsion = 8494.789956 eV Total energy + Delta-G solvation = -1820.747798 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.41764 -36.30815 -33.69691 -32.00087 -28.28382 -26.56219 -25.39216 -22.66659 -20.54106 -18.98821 -17.39710 -16.85213 -16.33901 -15.37849 -15.16142 -14.92257 -14.25886 -13.67305 -13.43544 -13.22958 -13.02389 -12.60859 -12.29557 -12.03036 -11.79119 -11.54493 -11.20828 -10.67204 -9.54245 -8.80314 -8.23114 -5.57727 1.24928 1.37233 1.48695 2.38157 2.99559 3.35151 3.61590 3.79152 3.98816 4.01401 4.18641 4.61692 4.71378 4.80566 4.83758 4.94192 5.04772 5.16260 5.17732 5.46331 5.88347 6.11357 6.23531 6.67715 6.94596 7.61358 8.01612 8.96902 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.056655 B = 0.018900 C = 0.016559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.099759 B = 1481.154237 C = 1690.508265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.611 5.611 3 C -0.266 4.266 4 H 0.044 0.956 5 C -0.027 4.027 6 N -0.952 5.952 7 Si 0.945 3.055 8 H -0.265 1.265 9 H -0.309 1.309 10 H -0.262 1.262 11 C 0.122 3.878 12 C -0.145 4.145 13 C 0.089 3.911 14 N -0.833 5.833 15 C -0.191 4.191 16 H 0.014 0.986 17 H 0.036 0.964 18 H 0.066 0.934 19 H 0.263 0.737 20 H 0.070 0.930 21 H 0.056 0.944 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.350 0.650 25 H 0.347 0.653 26 H 0.093 0.907 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -12.644 1.446 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.334 5.334 3 C -0.395 4.395 4 H 0.062 0.938 5 C -0.223 4.223 6 N -0.596 5.596 7 Si 0.773 3.227 8 H -0.192 1.192 9 H -0.238 1.238 10 H -0.186 1.186 11 C 0.014 3.986 12 C -0.185 4.185 13 C -0.024 4.024 14 N -0.363 5.363 15 C -0.232 4.232 16 H 0.032 0.968 17 H 0.054 0.946 18 H 0.084 0.916 19 H 0.072 0.928 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.103 0.897 23 H 0.121 0.879 24 H 0.164 0.836 25 H 0.160 0.840 26 H 0.111 0.889 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.812 -12.673 0.768 13.963 hybrid contribution 0.229 0.530 1.573 1.675 sum -5.583 -12.143 2.341 13.568 Atomic orbital electron populations 1.21123 0.82351 1.00311 0.98325 1.44186 1.02215 1.01134 1.85823 1.18859 1.03177 0.90891 1.26619 0.93785 1.26052 0.96871 0.98940 1.00423 1.69998 1.08529 1.38420 1.42674 0.85932 0.77754 0.78613 0.80408 1.19211 1.23757 1.18603 1.22239 0.95614 0.84111 0.96591 1.23614 1.01972 0.95345 0.97613 1.22499 0.96514 0.89899 0.93498 1.58667 1.07379 1.13170 1.57047 1.24461 1.01875 0.98255 0.98613 0.96778 0.94570 0.91556 0.92780 0.91224 0.92482 0.89697 0.87893 0.83557 0.83953 0.88864 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.77 9.37 127.77 1.20 5.97 15 2 N -0.61 -29.30 2.76 -699.51 -1.93 -31.24 15 3 C -0.27 -15.56 9.97 84.03 0.84 -14.72 15 4 H 0.04 2.84 8.06 -2.91 -0.02 2.81 15 5 C -0.03 -1.61 5.24 84.86 0.44 -1.17 15 6 N -0.95 -60.74 13.97 21.65 0.30 -60.44 15 7 Si 0.94 46.90 24.44 68.60 1.68 48.58 15 8 H -0.27 -12.25 6.30 99.48 0.63 -11.63 15 9 H -0.31 -15.52 7.11 99.48 0.71 -14.82 15 10 H -0.26 -12.51 7.11 99.48 0.71 -11.80 15 11 C 0.12 5.13 2.56 45.58 0.12 5.24 15 12 C -0.14 -5.04 7.39 31.12 0.23 -4.81 15 13 C 0.09 2.53 5.00 45.45 0.23 2.76 15 14 N -0.83 -18.68 9.63 -166.50 -1.60 -20.28 15 15 C -0.19 -6.28 6.85 31.18 0.21 -6.07 15 16 H 0.01 0.53 8.14 -2.38 -0.02 0.51 15 17 H 0.04 1.41 8.06 -2.38 -0.02 1.39 15 18 H 0.07 2.10 6.23 -2.39 -0.01 2.09 15 19 H 0.26 15.88 8.31 -92.71 -0.77 15.11 15 20 H 0.07 3.32 4.03 -2.39 -0.01 3.31 15 21 H 0.06 2.03 8.14 -2.38 -0.02 2.01 15 22 H 0.08 2.83 6.96 -2.39 -0.02 2.82 15 23 H 0.10 2.84 8.14 -2.39 -0.02 2.83 15 24 H 0.35 6.27 9.08 -89.70 -0.81 5.46 15 25 H 0.35 7.09 8.87 -89.69 -0.80 6.30 15 26 H 0.09 2.83 6.60 -2.39 -0.02 2.81 15 27 H 0.05 1.83 7.72 -2.39 -0.02 1.81 15 Total: -1.00 -66.38 216.03 1.19 -65.19 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -0.52 Total: 11.00 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 3.27 Total: -12.80 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -3.24 Total: -111.96 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.68 Total: 48.58 kcal Total: -66.38 1.19 -65.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307379361.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.147 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds